Experiment: KB with Nonanoic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4944 and Psyr_4945 are separated by 103 nucleotides Psyr_4945 and Psyr_4946 overlap by 4 nucleotides
Psyr_4944: Psyr_4944 - transcriptional regulator, LysR family, at 5,859,155 to 5,860,036
_4944
Psyr_4945: Psyr_4945 - Formate dehydrogenase, subunit FdhD, at 5,860,140 to 5,860,976
_4945
Psyr_4946: Psyr_4946 - Oxidoreductase alpha (molybdopterin) subunit, at 5,860,973 to 5,863,309
_4946
Position (kb) 5860
5861 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5859.155 kb on - strand at 5859.232 kb on + strand at 5859.232 kb on + strand at 5859.233 kb on - strand at 5859.235 kb on + strand at 5859.345 kb on + strand, within Psyr_4944 at 5859.659 kb on + strand, within Psyr_4944 at 5859.659 kb on + strand, within Psyr_4944 at 5859.659 kb on + strand, within Psyr_4944 at 5859.659 kb on + strand, within Psyr_4944 at 5859.660 kb on - strand, within Psyr_4944 at 5859.660 kb on - strand, within Psyr_4944 at 5859.677 kb on - strand, within Psyr_4944 at 5859.781 kb on + strand, within Psyr_4944 at 5859.810 kb on + strand, within Psyr_4944 at 5859.811 kb on - strand, within Psyr_4944 at 5859.846 kb on + strand, within Psyr_4944 at 5860.057 kb on - strand at 5860.103 kb on + strand at 5860.103 kb on + strand at 5860.206 kb on + strand at 5860.206 kb on + strand at 5860.206 kb on + strand at 5860.207 kb on - strand at 5860.207 kb on - strand at 5860.213 kb on - strand at 5860.213 kb on - strand at 5860.281 kb on + strand, within Psyr_4945 at 5860.281 kb on + strand, within Psyr_4945 at 5860.282 kb on - strand, within Psyr_4945 at 5860.390 kb on - strand, within Psyr_4945 at 5860.825 kb on + strand, within Psyr_4945 at 5860.902 kb on - strand at 5860.912 kb on + strand at 5860.913 kb on - strand at 5860.913 kb on - strand at 5860.947 kb on + strand at 5860.947 kb on + strand at 5860.947 kb on + strand at 5860.948 kb on - strand at 5860.948 kb on - strand at 5860.948 kb on - strand at 5860.948 kb on - strand at 5860.949 kb on + strand at 5860.949 kb on + strand at 5860.950 kb on - strand at 5860.950 kb on - strand at 5860.950 kb on - strand at 5861.345 kb on + strand, within Psyr_4946 at 5861.345 kb on + strand, within Psyr_4946 at 5861.345 kb on + strand, within Psyr_4946 at 5861.345 kb on + strand, within Psyr_4946 at 5861.345 kb on + strand, within Psyr_4946 at 5861.345 kb on + strand, within Psyr_4946 at 5861.345 kb on + strand, within Psyr_4946 at 5861.346 kb on - strand, within Psyr_4946 at 5861.366 kb on + strand, within Psyr_4946 at 5861.450 kb on + strand, within Psyr_4946 at 5861.450 kb on + strand, within Psyr_4946 at 5861.450 kb on + strand, within Psyr_4946 at 5861.450 kb on + strand, within Psyr_4946 at 5861.451 kb on - strand, within Psyr_4946 at 5861.451 kb on - strand, within Psyr_4946 at 5861.484 kb on - strand, within Psyr_4946 at 5861.489 kb on + strand, within Psyr_4946 at 5861.489 kb on + strand, within Psyr_4946 at 5861.825 kb on + strand, within Psyr_4946 at 5861.826 kb on - strand, within Psyr_4946 at 5861.826 kb on - strand, within Psyr_4946 at 5861.976 kb on - strand, within Psyr_4946
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM remove 5,859,155 - +0.2 5,859,232 + -0.9 5,859,232 + -1.2 5,859,233 - -1.4 5,859,235 + +1.4 5,859,345 + Psyr_4944 0.22 -1.4 5,859,659 + Psyr_4944 0.57 +1.8 5,859,659 + Psyr_4944 0.57 +0.8 5,859,659 + Psyr_4944 0.57 +0.4 5,859,659 + Psyr_4944 0.57 -0.0 5,859,660 - Psyr_4944 0.57 +1.9 5,859,660 - Psyr_4944 0.57 -0.6 5,859,677 - Psyr_4944 0.59 -0.2 5,859,781 + Psyr_4944 0.71 -0.2 5,859,810 + Psyr_4944 0.74 -1.0 5,859,811 - Psyr_4944 0.74 -0.7 5,859,846 + Psyr_4944 0.78 -1.0 5,860,057 - +0.3 5,860,103 + -0.9 5,860,103 + -0.1 5,860,206 + -2.0 5,860,206 + +1.0 5,860,206 + -0.2 5,860,207 - -0.6 5,860,207 - +0.1 5,860,213 - -0.1 5,860,213 - +0.5 5,860,281 + Psyr_4945 0.17 -0.4 5,860,281 + Psyr_4945 0.17 -0.4 5,860,282 - Psyr_4945 0.17 +0.4 5,860,390 - Psyr_4945 0.30 -0.4 5,860,825 + Psyr_4945 0.82 -1.7 5,860,902 - +0.4 5,860,912 + +0.3 5,860,913 - -1.4 5,860,913 - +0.8 5,860,947 + +0.4 5,860,947 + +0.8 5,860,947 + -0.0 5,860,948 - +0.5 5,860,948 - +0.0 5,860,948 - -0.3 5,860,948 - -0.3 5,860,949 + +0.4 5,860,949 + +1.6 5,860,950 - +1.4 5,860,950 - +0.7 5,860,950 - +0.9 5,861,345 + Psyr_4946 0.16 -0.8 5,861,345 + Psyr_4946 0.16 -0.2 5,861,345 + Psyr_4946 0.16 -0.3 5,861,345 + Psyr_4946 0.16 +1.4 5,861,345 + Psyr_4946 0.16 -0.5 5,861,345 + Psyr_4946 0.16 +2.4 5,861,345 + Psyr_4946 0.16 -1.2 5,861,346 - Psyr_4946 0.16 -0.4 5,861,366 + Psyr_4946 0.17 +1.4 5,861,450 + Psyr_4946 0.20 -0.6 5,861,450 + Psyr_4946 0.20 +3.4 5,861,450 + Psyr_4946 0.20 -0.2 5,861,450 + Psyr_4946 0.20 +0.2 5,861,451 - Psyr_4946 0.20 -0.6 5,861,451 - Psyr_4946 0.20 +0.0 5,861,484 - Psyr_4946 0.22 +0.8 5,861,489 + Psyr_4946 0.22 -0.5 5,861,489 + Psyr_4946 0.22 -2.6 5,861,825 + Psyr_4946 0.36 -0.1 5,861,826 - Psyr_4946 0.36 -0.1 5,861,826 - Psyr_4946 0.36 +2.2 5,861,976 - Psyr_4946 0.43 -0.1
Or see this region's nucleotide sequence