Experiment: KB with Nonanoic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4578 and Psyr_4579 are separated by 34 nucleotides Psyr_4579 and Psyr_4580 overlap by 4 nucleotides Psyr_4580 and Psyr_4581 are separated by 9 nucleotides
Psyr_4578: Psyr_4578 - conserved hypothetical protein, at 5,440,415 to 5,441,110
_4578
Psyr_4579: Psyr_4579 - indole-3-glycerol phosphate synthase, at 5,441,145 to 5,441,981
_4579
Psyr_4580: Psyr_4580 - anthranilate phosphoribosyltransferase, at 5,441,978 to 5,443,039
_4580
Psyr_4581: Psyr_4581 - anthranilate synthase, component II, at 5,443,049 to 5,443,648
_4581
Position (kb) 5441
5442
5443
5444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.087 kb on + strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.088 kb on - strand at 5441.257 kb on + strand, within Psyr_4579 at 5441.258 kb on - strand, within Psyr_4579 at 5441.258 kb on - strand, within Psyr_4579 at 5441.258 kb on - strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.384 kb on + strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579 at 5441.385 kb on - strand, within Psyr_4579 at 5441.421 kb on - strand, within Psyr_4579 at 5441.475 kb on + strand, within Psyr_4579 at 5441.475 kb on + strand, within Psyr_4579 at 5441.475 kb on + strand, within Psyr_4579 at 5441.475 kb on + strand, within Psyr_4579 at 5441.475 kb on + strand, within Psyr_4579 at 5441.475 kb on + strand, within Psyr_4579 at 5441.476 kb on - strand, within Psyr_4579 at 5441.476 kb on - strand, within Psyr_4579 at 5441.476 kb on - strand, within Psyr_4579 at 5441.660 kb on - strand, within Psyr_4579 at 5441.729 kb on - strand, within Psyr_4579 at 5442.003 kb on - strand at 5442.493 kb on + strand, within Psyr_4580 at 5442.494 kb on - strand, within Psyr_4580 at 5442.494 kb on - strand, within Psyr_4580 at 5442.633 kb on + strand, within Psyr_4580 at 5442.691 kb on + strand, within Psyr_4580 at 5442.691 kb on + strand, within Psyr_4580 at 5442.691 kb on + strand, within Psyr_4580 at 5442.692 kb on - strand, within Psyr_4580 at 5442.761 kb on - strand, within Psyr_4580 at 5443.244 kb on - strand, within Psyr_4581 at 5443.596 kb on + strand at 5443.596 kb on + strand at 5443.611 kb on + strand at 5443.611 kb on + strand at 5443.611 kb on + strand at 5443.611 kb on + strand at 5443.611 kb on + strand at 5443.612 kb on - strand at 5443.612 kb on - strand at 5443.616 kb on - strand at 5443.626 kb on + strand at 5443.626 kb on + strand at 5443.627 kb on - strand at 5443.627 kb on - strand at 5443.670 kb on + strand at 5443.772 kb on + strand at 5443.772 kb on + strand at 5443.772 kb on + strand at 5443.779 kb on - strand at 5443.806 kb on + strand at 5443.806 kb on + strand at 5443.807 kb on - strand at 5443.910 kb on + strand at 5443.936 kb on - strand at 5443.936 kb on - strand at 5443.936 kb on - strand at 5443.972 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM remove 5,441,087 + -1.4 5,441,087 + -1.3 5,441,087 + -0.1 5,441,087 + +1.6 5,441,087 + -3.4 5,441,087 + +1.3 5,441,087 + +1.1 5,441,087 + +0.1 5,441,087 + +0.4 5,441,087 + +0.3 5,441,087 + -0.9 5,441,087 + -0.4 5,441,087 + +0.1 5,441,087 + -0.1 5,441,087 + +0.6 5,441,087 + -1.7 5,441,087 + +0.3 5,441,087 + +0.3 5,441,087 + +0.6 5,441,087 + -0.1 5,441,087 + -0.1 5,441,087 + -1.3 5,441,087 + -1.3 5,441,087 + +0.2 5,441,088 - -0.9 5,441,088 - -0.6 5,441,088 - -0.0 5,441,088 - +2.5 5,441,088 - -1.6 5,441,088 - -0.6 5,441,088 - -1.3 5,441,088 - +0.5 5,441,088 - +0.4 5,441,088 - +0.2 5,441,088 - -0.4 5,441,088 - +2.3 5,441,088 - +2.3 5,441,088 - +0.4 5,441,088 - -0.2 5,441,088 - -0.2 5,441,088 - +1.4 5,441,088 - +0.9 5,441,088 - -1.2 5,441,088 - -0.9 5,441,088 - -1.7 5,441,088 - -0.4 5,441,088 - +1.6 5,441,257 + Psyr_4579 0.13 +0.0 5,441,258 - Psyr_4579 0.14 +2.1 5,441,258 - Psyr_4579 0.14 +0.7 5,441,258 - Psyr_4579 0.14 -0.9 5,441,384 + Psyr_4579 0.29 -0.4 5,441,384 + Psyr_4579 0.29 +1.4 5,441,384 + Psyr_4579 0.29 +0.7 5,441,384 + Psyr_4579 0.29 +0.1 5,441,384 + Psyr_4579 0.29 -0.8 5,441,385 - Psyr_4579 0.29 -0.9 5,441,385 - Psyr_4579 0.29 +0.9 5,441,385 - Psyr_4579 0.29 -1.5 5,441,385 - Psyr_4579 0.29 +2.0 5,441,385 - Psyr_4579 0.29 +0.6 5,441,421 - Psyr_4579 0.33 +1.3 5,441,475 + Psyr_4579 0.39 -0.9 5,441,475 + Psyr_4579 0.39 +0.1 5,441,475 + Psyr_4579 0.39 +1.2 5,441,475 + Psyr_4579 0.39 -1.8 5,441,475 + Psyr_4579 0.39 -0.9 5,441,475 + Psyr_4579 0.39 +0.6 5,441,476 - Psyr_4579 0.40 +0.1 5,441,476 - Psyr_4579 0.40 -0.0 5,441,476 - Psyr_4579 0.40 +0.4 5,441,660 - Psyr_4579 0.62 -0.7 5,441,729 - Psyr_4579 0.70 -0.6 5,442,003 - -1.1 5,442,493 + Psyr_4580 0.48 -1.6 5,442,494 - Psyr_4580 0.49 -0.7 5,442,494 - Psyr_4580 0.49 +0.1 5,442,633 + Psyr_4580 0.62 -1.1 5,442,691 + Psyr_4580 0.67 +0.5 5,442,691 + Psyr_4580 0.67 +0.0 5,442,691 + Psyr_4580 0.67 -1.4 5,442,692 - Psyr_4580 0.67 +0.7 5,442,761 - Psyr_4580 0.74 -0.3 5,443,244 - Psyr_4581 0.33 -0.9 5,443,596 + -1.4 5,443,596 + +1.0 5,443,611 + +0.6 5,443,611 + -0.5 5,443,611 + -0.4 5,443,611 + -0.6 5,443,611 + +0.3 5,443,612 - -0.1 5,443,612 - -0.4 5,443,616 - +0.3 5,443,626 + +0.3 5,443,626 + -1.8 5,443,627 - -1.2 5,443,627 - -0.4 5,443,670 + -1.4 5,443,772 + +0.3 5,443,772 + +1.0 5,443,772 + -2.3 5,443,779 - +0.4 5,443,806 + +0.6 5,443,806 + -0.0 5,443,807 - +2.9 5,443,910 + +0.3 5,443,936 - -0.0 5,443,936 - -0.4 5,443,936 - -0.0 5,443,972 - +1.3
Or see this region's nucleotide sequence