Experiment: KB with Nonanoic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4339 and Psyr_4340 are separated by 326 nucleotides Psyr_4340 and Psyr_4341 are separated by 23 nucleotides Psyr_4341 and Psyr_4342 are separated by 271 nucleotides
Psyr_4339: Psyr_4339 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase, at 5,191,591 to 5,193,624
_4339
Psyr_4340: Psyr_4340 - phosphomethylpyrimidine kinase, putative, at 5,193,951 to 5,194,748
_4340
Psyr_4341: Psyr_4341 - thiamine-phosphate diphosphorylase, at 5,194,772 to 5,195,389
_4341
Psyr_4342: Psyr_4342 - glutamate-1-semialdehyde 2,1-aminomutase, at 5,195,661 to 5,196,944
_4342
Position (kb) 5193
5194
5195 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5192.951 kb on + strand, within Psyr_4339 at 5192.952 kb on - strand, within Psyr_4339 at 5192.976 kb on - strand, within Psyr_4339 at 5192.976 kb on - strand, within Psyr_4339 at 5192.976 kb on - strand, within Psyr_4339 at 5192.976 kb on - strand, within Psyr_4339 at 5192.976 kb on - strand, within Psyr_4339 at 5192.976 kb on - strand, within Psyr_4339 at 5192.976 kb on - strand, within Psyr_4339 at 5192.979 kb on + strand, within Psyr_4339 at 5192.980 kb on - strand, within Psyr_4339 at 5192.980 kb on - strand, within Psyr_4339 at 5192.990 kb on + strand, within Psyr_4339 at 5193.017 kb on + strand, within Psyr_4339 at 5193.017 kb on + strand, within Psyr_4339 at 5193.018 kb on - strand, within Psyr_4339 at 5193.035 kb on + strand, within Psyr_4339 at 5193.036 kb on - strand, within Psyr_4339 at 5193.061 kb on - strand, within Psyr_4339 at 5193.061 kb on - strand, within Psyr_4339 at 5193.062 kb on + strand, within Psyr_4339 at 5193.062 kb on + strand, within Psyr_4339 at 5193.062 kb on + strand, within Psyr_4339 at 5193.062 kb on + strand, within Psyr_4339 at 5193.062 kb on + strand, within Psyr_4339 at 5193.062 kb on + strand, within Psyr_4339 at 5193.062 kb on + strand, within Psyr_4339 at 5193.062 kb on + strand, within Psyr_4339 at 5193.062 kb on + strand, within Psyr_4339 at 5193.063 kb on - strand, within Psyr_4339 at 5193.063 kb on - strand, within Psyr_4339 at 5193.063 kb on - strand, within Psyr_4339 at 5193.063 kb on - strand, within Psyr_4339 at 5193.083 kb on + strand, within Psyr_4339 at 5193.084 kb on - strand, within Psyr_4339 at 5193.117 kb on + strand, within Psyr_4339 at 5193.118 kb on - strand, within Psyr_4339 at 5193.125 kb on + strand, within Psyr_4339 at 5193.125 kb on + strand, within Psyr_4339 at 5193.125 kb on + strand, within Psyr_4339 at 5193.125 kb on + strand, within Psyr_4339 at 5193.125 kb on + strand, within Psyr_4339 at 5193.126 kb on - strand, within Psyr_4339 at 5193.126 kb on - strand, within Psyr_4339 at 5193.126 kb on - strand, within Psyr_4339 at 5193.126 kb on - strand, within Psyr_4339 at 5193.126 kb on - strand, within Psyr_4339 at 5193.126 kb on - strand, within Psyr_4339 at 5193.126 kb on - strand, within Psyr_4339 at 5193.170 kb on + strand, within Psyr_4339 at 5193.170 kb on + strand, within Psyr_4339 at 5193.170 kb on + strand, within Psyr_4339 at 5193.171 kb on - strand, within Psyr_4339 at 5193.171 kb on - strand, within Psyr_4339 at 5193.171 kb on - strand, within Psyr_4339 at 5193.171 kb on - strand, within Psyr_4339 at 5193.171 kb on - strand, within Psyr_4339 at 5193.211 kb on - strand, within Psyr_4339 at 5193.260 kb on + strand, within Psyr_4339 at 5193.412 kb on - strand, within Psyr_4339 at 5193.478 kb on + strand at 5193.599 kb on + strand at 5193.599 kb on + strand at 5193.599 kb on + strand at 5193.599 kb on + strand at 5193.599 kb on + strand at 5193.600 kb on - strand at 5193.600 kb on - strand at 5193.600 kb on - strand at 5193.600 kb on - strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.697 kb on + strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.698 kb on - strand at 5193.699 kb on + strand at 5193.699 kb on + strand at 5193.699 kb on + strand at 5193.700 kb on - strand at 5193.700 kb on - strand at 5193.715 kb on + strand at 5193.715 kb on + strand at 5193.715 kb on + strand at 5193.768 kb on - strand at 5193.781 kb on + strand at 5193.804 kb on + strand at 5193.804 kb on + strand at 5193.804 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.810 kb on + strand at 5193.811 kb on - strand at 5193.811 kb on - strand at 5193.811 kb on - strand at 5193.811 kb on - strand at 5193.811 kb on - strand at 5193.813 kb on - strand at 5193.839 kb on + strand at 5193.931 kb on + strand at 5193.932 kb on - strand at 5193.932 kb on - strand at 5193.938 kb on - strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.956 kb on + strand at 5193.957 kb on - strand at 5193.957 kb on - strand at 5193.957 kb on - strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.960 kb on + strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.961 kb on - strand at 5193.963 kb on - strand at 5194.005 kb on - strand at 5194.032 kb on - strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.033 kb on + strand, within Psyr_4340 at 5194.034 kb on - strand, within Psyr_4340 at 5194.034 kb on - strand, within Psyr_4340 at 5194.034 kb on - strand, within Psyr_4340 at 5194.180 kb on + strand, within Psyr_4340 at 5194.418 kb on + strand, within Psyr_4340 at 5194.419 kb on - strand, within Psyr_4340 at 5194.444 kb on + strand, within Psyr_4340 at 5194.444 kb on + strand, within Psyr_4340 at 5194.445 kb on - strand, within Psyr_4340 at 5194.461 kb on + strand, within Psyr_4340 at 5194.462 kb on - strand, within Psyr_4340 at 5194.515 kb on + strand, within Psyr_4340 at 5194.569 kb on + strand, within Psyr_4340 at 5194.569 kb on + strand, within Psyr_4340 at 5194.569 kb on + strand, within Psyr_4340 at 5194.570 kb on - strand, within Psyr_4340 at 5194.570 kb on - strand, within Psyr_4340 at 5194.662 kb on + strand, within Psyr_4340 at 5194.662 kb on + strand, within Psyr_4340 at 5194.662 kb on + strand, within Psyr_4340 at 5194.662 kb on + strand, within Psyr_4340 at 5194.662 kb on + strand, within Psyr_4340 at 5194.663 kb on - strand, within Psyr_4340 at 5194.747 kb on - strand at 5194.790 kb on + strand at 5194.791 kb on - strand at 5194.835 kb on + strand, within Psyr_4341 at 5194.835 kb on + strand, within Psyr_4341 at 5194.949 kb on + strand, within Psyr_4341 at 5194.949 kb on + strand, within Psyr_4341 at 5194.949 kb on + strand, within Psyr_4341 at 5194.950 kb on - strand, within Psyr_4341 at 5194.950 kb on - strand, within Psyr_4341 at 5194.950 kb on - strand, within Psyr_4341 at 5194.950 kb on - strand, within Psyr_4341 at 5195.138 kb on + strand, within Psyr_4341 at 5195.138 kb on + strand, within Psyr_4341 at 5195.138 kb on + strand, within Psyr_4341 at 5195.138 kb on + strand, within Psyr_4341 at 5195.138 kb on + strand, within Psyr_4341 at 5195.139 kb on - strand, within Psyr_4341 at 5195.139 kb on - strand, within Psyr_4341 at 5195.139 kb on - strand, within Psyr_4341 at 5195.387 kb on + strand at 5195.387 kb on + strand at 5195.387 kb on + strand at 5195.387 kb on + strand at 5195.397 kb on + strand at 5195.398 kb on - strand at 5195.398 kb on - strand at 5195.398 kb on - strand at 5195.398 kb on - strand at 5195.398 kb on - strand at 5195.535 kb on + strand at 5195.535 kb on + strand at 5195.535 kb on + strand at 5195.535 kb on + strand at 5195.535 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.537 kb on + strand at 5195.624 kb on - strand at 5195.624 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM remove 5,192,951 + Psyr_4339 0.67 -0.1 5,192,952 - Psyr_4339 0.67 -0.9 5,192,976 - Psyr_4339 0.68 +0.0 5,192,976 - Psyr_4339 0.68 +0.5 5,192,976 - Psyr_4339 0.68 +0.2 5,192,976 - Psyr_4339 0.68 -0.3 5,192,976 - Psyr_4339 0.68 -0.2 5,192,976 - Psyr_4339 0.68 -2.0 5,192,976 - Psyr_4339 0.68 -0.0 5,192,979 + Psyr_4339 0.68 -0.5 5,192,980 - Psyr_4339 0.68 -0.0 5,192,980 - Psyr_4339 0.68 +0.4 5,192,990 + Psyr_4339 0.69 +0.6 5,193,017 + Psyr_4339 0.70 -2.7 5,193,017 + Psyr_4339 0.70 -0.3 5,193,018 - Psyr_4339 0.70 -0.2 5,193,035 + Psyr_4339 0.71 +0.5 5,193,036 - Psyr_4339 0.71 +0.9 5,193,061 - Psyr_4339 0.72 -1.0 5,193,061 - Psyr_4339 0.72 +0.5 5,193,062 + Psyr_4339 0.72 +0.1 5,193,062 + Psyr_4339 0.72 +0.2 5,193,062 + Psyr_4339 0.72 +0.2 5,193,062 + Psyr_4339 0.72 -0.3 5,193,062 + Psyr_4339 0.72 -0.7 5,193,062 + Psyr_4339 0.72 -1.2 5,193,062 + Psyr_4339 0.72 +0.7 5,193,062 + Psyr_4339 0.72 +2.0 5,193,062 + Psyr_4339 0.72 -0.3 5,193,063 - Psyr_4339 0.72 -0.6 5,193,063 - Psyr_4339 0.72 -1.9 5,193,063 - Psyr_4339 0.72 -1.3 5,193,063 - Psyr_4339 0.72 +1.1 5,193,083 + Psyr_4339 0.73 -0.7 5,193,084 - Psyr_4339 0.73 -0.4 5,193,117 + Psyr_4339 0.75 +0.4 5,193,118 - Psyr_4339 0.75 -2.1 5,193,125 + Psyr_4339 0.75 +0.1 5,193,125 + Psyr_4339 0.75 -0.5 5,193,125 + Psyr_4339 0.75 +0.3 5,193,125 + Psyr_4339 0.75 -0.6 5,193,125 + Psyr_4339 0.75 +0.9 5,193,126 - Psyr_4339 0.75 -0.8 5,193,126 - Psyr_4339 0.75 +0.3 5,193,126 - Psyr_4339 0.75 -0.5 5,193,126 - Psyr_4339 0.75 +0.5 5,193,126 - Psyr_4339 0.75 -1.8 5,193,126 - Psyr_4339 0.75 -0.8 5,193,126 - Psyr_4339 0.75 +0.7 5,193,170 + Psyr_4339 0.78 +0.4 5,193,170 + Psyr_4339 0.78 +0.5 5,193,170 + Psyr_4339 0.78 -0.0 5,193,171 - Psyr_4339 0.78 -0.3 5,193,171 - Psyr_4339 0.78 -1.9 5,193,171 - Psyr_4339 0.78 -0.5 5,193,171 - Psyr_4339 0.78 -0.2 5,193,171 - Psyr_4339 0.78 +0.9 5,193,211 - Psyr_4339 0.80 +0.7 5,193,260 + Psyr_4339 0.82 -0.0 5,193,412 - Psyr_4339 0.90 -0.4 5,193,478 + +0.0 5,193,599 + -1.6 5,193,599 + +0.1 5,193,599 + -0.4 5,193,599 + -1.7 5,193,599 + +0.1 5,193,600 - +0.4 5,193,600 - -0.3 5,193,600 - -1.9 5,193,600 - -0.0 5,193,697 + -1.1 5,193,697 + -0.2 5,193,697 + +0.5 5,193,697 + -0.5 5,193,697 + -2.0 5,193,697 + -0.9 5,193,697 + -0.1 5,193,697 + -0.6 5,193,697 + -0.5 5,193,697 + -0.7 5,193,697 + -3.1 5,193,697 + +0.8 5,193,697 + +0.5 5,193,697 + -1.5 5,193,697 + -1.1 5,193,698 - -0.1 5,193,698 - +0.5 5,193,698 - +2.3 5,193,698 - +0.9 5,193,698 - +0.8 5,193,698 - +1.1 5,193,698 - -0.7 5,193,698 - -1.9 5,193,698 - +1.1 5,193,698 - +0.8 5,193,698 - -1.3 5,193,698 - +1.0 5,193,698 - -1.0 5,193,698 - -0.3 5,193,699 + +0.4 5,193,699 + +0.2 5,193,699 + +0.5 5,193,700 - -0.7 5,193,700 - -0.7 5,193,715 + -0.7 5,193,715 + -1.1 5,193,715 + -0.2 5,193,768 - +1.3 5,193,781 + -0.4 5,193,804 + -1.6 5,193,804 + +0.6 5,193,804 + -0.1 5,193,810 + +2.6 5,193,810 + -2.8 5,193,810 + +0.5 5,193,810 + -0.3 5,193,810 + -0.2 5,193,810 + -0.4 5,193,810 + -0.7 5,193,810 + -0.6 5,193,810 + +0.1 5,193,810 + +0.9 5,193,811 - +0.6 5,193,811 - +2.2 5,193,811 - -0.7 5,193,811 - -1.0 5,193,811 - -0.3 5,193,813 - +0.1 5,193,839 + +1.2 5,193,931 + -0.1 5,193,932 - +0.3 5,193,932 - +1.0 5,193,938 - -0.5 5,193,956 + +2.9 5,193,956 + +0.7 5,193,956 + -2.9 5,193,956 + -0.7 5,193,956 + -1.1 5,193,956 + -1.8 5,193,956 + -0.6 5,193,957 - -1.7 5,193,957 - +0.2 5,193,957 - -3.5 5,193,960 + +0.7 5,193,960 + +3.3 5,193,960 + -0.3 5,193,960 + -0.9 5,193,960 + -3.1 5,193,960 + -1.4 5,193,960 + -1.7 5,193,960 + -0.0 5,193,960 + -1.1 5,193,960 + -1.3 5,193,960 + -0.7 5,193,960 + +1.3 5,193,960 + +0.3 5,193,960 + +1.4 5,193,960 + -1.3 5,193,960 + -1.0 5,193,960 + -0.2 5,193,960 + -0.7 5,193,960 + +1.3 5,193,960 + -2.3 5,193,960 + +1.2 5,193,960 + -0.6 5,193,961 - -2.4 5,193,961 - -1.3 5,193,961 - -1.3 5,193,961 - -1.2 5,193,961 - -0.9 5,193,961 - -2.4 5,193,961 - -1.7 5,193,961 - -0.3 5,193,961 - +1.3 5,193,961 - -0.9 5,193,961 - +1.3 5,193,961 - -2.8 5,193,961 - +0.3 5,193,961 - -0.5 5,193,961 - -2.9 5,193,961 - +0.6 5,193,961 - +1.9 5,193,961 - -0.0 5,193,963 - -1.4 5,194,005 - -0.1 5,194,032 - Psyr_4340 0.10 -3.5 5,194,033 + Psyr_4340 0.10 -1.2 5,194,033 + Psyr_4340 0.10 +1.0 5,194,033 + Psyr_4340 0.10 +1.1 5,194,033 + Psyr_4340 0.10 -0.6 5,194,033 + Psyr_4340 0.10 -1.0 5,194,033 + Psyr_4340 0.10 -0.9 5,194,033 + Psyr_4340 0.10 -0.3 5,194,033 + Psyr_4340 0.10 +0.4 5,194,033 + Psyr_4340 0.10 -0.8 5,194,033 + Psyr_4340 0.10 -0.9 5,194,033 + Psyr_4340 0.10 -1.5 5,194,033 + Psyr_4340 0.10 -3.9 5,194,033 + Psyr_4340 0.10 -1.0 5,194,034 - Psyr_4340 0.10 -0.0 5,194,034 - Psyr_4340 0.10 +0.3 5,194,034 - Psyr_4340 0.10 +0.1 5,194,180 + Psyr_4340 0.29 -0.7 5,194,418 + Psyr_4340 0.59 -1.8 5,194,419 - Psyr_4340 0.59 -0.7 5,194,444 + Psyr_4340 0.62 -1.1 5,194,444 + Psyr_4340 0.62 -1.0 5,194,445 - Psyr_4340 0.62 -1.1 5,194,461 + Psyr_4340 0.64 -2.4 5,194,462 - Psyr_4340 0.64 -1.4 5,194,515 + Psyr_4340 0.71 +0.7 5,194,569 + Psyr_4340 0.77 -2.6 5,194,569 + Psyr_4340 0.77 -0.1 5,194,569 + Psyr_4340 0.77 -0.7 5,194,570 - Psyr_4340 0.78 +1.3 5,194,570 - Psyr_4340 0.78 -1.2 5,194,662 + Psyr_4340 0.89 +0.4 5,194,662 + Psyr_4340 0.89 +1.0 5,194,662 + Psyr_4340 0.89 +2.3 5,194,662 + Psyr_4340 0.89 -1.8 5,194,662 + Psyr_4340 0.89 +0.7 5,194,663 - Psyr_4340 0.89 -1.8 5,194,747 - +0.6 5,194,790 + -2.4 5,194,791 - -3.9 5,194,835 + Psyr_4341 0.10 +0.1 5,194,835 + Psyr_4341 0.10 -1.5 5,194,949 + Psyr_4341 0.29 -2.7 5,194,949 + Psyr_4341 0.29 -0.5 5,194,949 + Psyr_4341 0.29 -1.6 5,194,950 - Psyr_4341 0.29 -2.6 5,194,950 - Psyr_4341 0.29 +0.7 5,194,950 - Psyr_4341 0.29 -2.5 5,194,950 - Psyr_4341 0.29 -0.9 5,195,138 + Psyr_4341 0.59 +3.3 5,195,138 + Psyr_4341 0.59 -0.2 5,195,138 + Psyr_4341 0.59 -0.7 5,195,138 + Psyr_4341 0.59 -0.3 5,195,138 + Psyr_4341 0.59 -1.7 5,195,139 - Psyr_4341 0.59 +1.1 5,195,139 - Psyr_4341 0.59 +1.1 5,195,139 - Psyr_4341 0.59 +1.7 5,195,387 + +0.9 5,195,387 + -3.9 5,195,387 + +0.3 5,195,387 + +3.9 5,195,397 + -0.3 5,195,398 - -1.5 5,195,398 - -0.3 5,195,398 - -2.1 5,195,398 - +1.0 5,195,398 - +1.5 5,195,535 + -2.1 5,195,535 + +1.9 5,195,535 + -0.8 5,195,535 + +0.9 5,195,535 + -0.1 5,195,537 + -0.5 5,195,537 + +1.5 5,195,537 + -0.2 5,195,537 + -0.7 5,195,537 + -1.8 5,195,537 + -1.1 5,195,624 - +0.9 5,195,624 - -0.7
Or see this region's nucleotide sequence