Experiment: KB with Nonanoic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3832 and Psyr_3833 overlap by 11 nucleotides Psyr_3833 and Psyr_3834 are separated by 317 nucleotides Psyr_3834 and Psyr_3835 are separated by 68 nucleotides Psyr_3835 and Psyr_3836 are separated by 125 nucleotides
Psyr_3832: Psyr_3832 - Prevent-host-death protein, at 4,568,993 to 4,569,238
_3832
Psyr_3833: Psyr_3833 - Plasmid stabilization system, at 4,569,228 to 4,569,518
_3833
Psyr_3834: Psyr_3834 - AMP-dependent synthetase and ligase, at 4,569,836 to 4,571,527
_3834
Psyr_3835: Psyr_3835 - hypothetical protein, at 4,571,596 to 4,571,757
_3835
Psyr_3836: Psyr_3836 - AMP-dependent synthetase and ligase, at 4,571,883 to 4,573,571
_3836
Position (kb) 4569
4570
4571
4572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4568.908 kb on + strand at 4568.908 kb on + strand at 4568.909 kb on - strand at 4569.223 kb on + strand at 4569.224 kb on - strand at 4569.224 kb on - strand at 4569.224 kb on - strand at 4569.224 kb on - strand at 4569.224 kb on - strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.225 kb on + strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.226 kb on - strand at 4569.237 kb on - strand at 4569.288 kb on - strand, within Psyr_3833 at 4569.288 kb on - strand, within Psyr_3833 at 4569.378 kb on + strand, within Psyr_3833 at 4569.378 kb on + strand, within Psyr_3833 at 4569.379 kb on - strand, within Psyr_3833 at 4569.379 kb on - strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.434 kb on + strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.435 kb on - strand, within Psyr_3833 at 4569.482 kb on + strand, within Psyr_3833 at 4569.482 kb on + strand, within Psyr_3833 at 4569.483 kb on - strand, within Psyr_3833 at 4569.483 kb on - strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.486 kb on + strand, within Psyr_3833 at 4569.537 kb on + strand at 4569.537 kb on + strand at 4569.538 kb on - strand at 4569.648 kb on - strand at 4569.745 kb on - strand at 4569.778 kb on + strand at 4569.778 kb on + strand at 4569.780 kb on + strand at 4569.781 kb on - strand at 4569.782 kb on + strand at 4569.782 kb on + strand at 4569.783 kb on - strand at 4569.783 kb on - strand at 4569.783 kb on - strand at 4569.783 kb on - strand at 4569.783 kb on - strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.837 kb on + strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.838 kb on - strand at 4569.952 kb on - strand at 4570.106 kb on + strand, within Psyr_3834 at 4570.106 kb on + strand, within Psyr_3834 at 4570.156 kb on + strand, within Psyr_3834 at 4570.156 kb on + strand, within Psyr_3834 at 4570.156 kb on + strand, within Psyr_3834 at 4570.157 kb on - strand, within Psyr_3834 at 4570.157 kb on - strand, within Psyr_3834 at 4570.157 kb on - strand, within Psyr_3834 at 4570.185 kb on + strand, within Psyr_3834 at 4570.185 kb on + strand, within Psyr_3834 at 4570.186 kb on - strand, within Psyr_3834 at 4570.275 kb on + strand, within Psyr_3834 at 4570.408 kb on - strand, within Psyr_3834 at 4570.408 kb on - strand, within Psyr_3834 at 4570.408 kb on - strand, within Psyr_3834 at 4570.606 kb on + strand, within Psyr_3834 at 4570.737 kb on + strand, within Psyr_3834 at 4570.737 kb on + strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.738 kb on - strand, within Psyr_3834 at 4570.747 kb on - strand, within Psyr_3834 at 4570.888 kb on - strand, within Psyr_3834 at 4570.888 kb on - strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.016 kb on + strand, within Psyr_3834 at 4571.017 kb on - strand, within Psyr_3834 at 4571.017 kb on - strand, within Psyr_3834 at 4571.017 kb on - strand, within Psyr_3834 at 4571.202 kb on + strand, within Psyr_3834 at 4571.202 kb on + strand, within Psyr_3834 at 4571.202 kb on + strand, within Psyr_3834 at 4571.273 kb on + strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.274 kb on - strand, within Psyr_3834 at 4571.320 kb on + strand, within Psyr_3834 at 4571.361 kb on + strand at 4571.361 kb on + strand at 4571.361 kb on + strand at 4571.361 kb on + strand at 4571.361 kb on + strand at 4571.362 kb on - strand at 4571.362 kb on - strand at 4571.362 kb on - strand at 4571.362 kb on - strand at 4571.362 kb on - strand at 4571.362 kb on - strand at 4571.373 kb on + strand at 4571.373 kb on + strand at 4571.374 kb on - strand at 4571.374 kb on - strand at 4571.374 kb on - strand at 4571.499 kb on + strand at 4571.500 kb on - strand at 4571.500 kb on - strand at 4571.597 kb on + strand at 4571.597 kb on + strand at 4571.605 kb on - strand at 4571.622 kb on + strand, within Psyr_3835 at 4571.651 kb on - strand, within Psyr_3835 at 4571.651 kb on - strand, within Psyr_3835 at 4571.651 kb on - strand, within Psyr_3835 at 4571.704 kb on + strand, within Psyr_3835 at 4571.734 kb on + strand, within Psyr_3835 at 4571.798 kb on + strand at 4571.799 kb on - strand at 4571.799 kb on - strand at 4571.799 kb on - strand at 4571.975 kb on - strand at 4571.975 kb on - strand at 4572.231 kb on - strand, within Psyr_3836 at 4572.296 kb on - strand, within Psyr_3836 at 4572.429 kb on - strand, within Psyr_3836 at 4572.429 kb on - strand, within Psyr_3836
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM remove 4,568,908 + +0.6 4,568,908 + +0.8 4,568,909 - +0.2 4,569,223 + -1.1 4,569,224 - -0.8 4,569,224 - -0.7 4,569,224 - +0.7 4,569,224 - -1.1 4,569,224 - +0.5 4,569,225 + -0.7 4,569,225 + +3.4 4,569,225 + +0.2 4,569,225 + +0.7 4,569,225 + +2.1 4,569,225 + -2.5 4,569,225 + -2.9 4,569,225 + +2.1 4,569,225 + -0.5 4,569,225 + +0.5 4,569,225 + -0.3 4,569,225 + +1.5 4,569,225 + +0.0 4,569,225 + -2.9 4,569,225 + +0.6 4,569,225 + +1.6 4,569,225 + -0.9 4,569,225 + -0.2 4,569,225 + +0.2 4,569,225 + -0.0 4,569,225 + -0.5 4,569,225 + -2.2 4,569,225 + +1.1 4,569,225 + -0.8 4,569,225 + -0.7 4,569,225 + +2.4 4,569,225 + -0.3 4,569,225 + +0.9 4,569,225 + -0.4 4,569,225 + +0.8 4,569,225 + +1.1 4,569,225 + +0.8 4,569,225 + -2.2 4,569,225 + +0.8 4,569,225 + -1.2 4,569,225 + -1.6 4,569,225 + -0.8 4,569,225 + +1.8 4,569,225 + -1.2 4,569,225 + +0.2 4,569,226 - -2.1 4,569,226 - -0.6 4,569,226 - +1.1 4,569,226 - -2.2 4,569,226 - -0.6 4,569,226 - +0.5 4,569,226 - -0.3 4,569,226 - -1.1 4,569,226 - -1.2 4,569,226 - -0.9 4,569,226 - +0.8 4,569,226 - +1.6 4,569,226 - -1.7 4,569,226 - -1.2 4,569,226 - +0.4 4,569,226 - +0.1 4,569,226 - +1.1 4,569,226 - +0.3 4,569,226 - -1.1 4,569,226 - -1.5 4,569,226 - +0.2 4,569,226 - +0.6 4,569,226 - +0.3 4,569,237 - -0.5 4,569,288 - Psyr_3833 0.21 +0.8 4,569,288 - Psyr_3833 0.21 -0.0 4,569,378 + Psyr_3833 0.52 +1.1 4,569,378 + Psyr_3833 0.52 +2.0 4,569,379 - Psyr_3833 0.52 +1.1 4,569,379 - Psyr_3833 0.52 +0.8 4,569,434 + Psyr_3833 0.71 -0.6 4,569,434 + Psyr_3833 0.71 +1.1 4,569,435 - Psyr_3833 0.71 -0.9 4,569,435 - Psyr_3833 0.71 -1.8 4,569,482 + Psyr_3833 0.87 -0.9 4,569,482 + Psyr_3833 0.87 +0.6 4,569,483 - Psyr_3833 0.88 +0.4 4,569,483 - Psyr_3833 0.88 -0.1 4,569,486 + Psyr_3833 0.89 +0.7 4,569,486 + Psyr_3833 0.89 +0.8 4,569,486 + Psyr_3833 0.89 +1.1 4,569,486 + Psyr_3833 0.89 -2.9 4,569,486 + Psyr_3833 0.89 -0.7 4,569,537 + +0.8 4,569,537 + +2.1 4,569,538 - +0.4 4,569,648 - +0.2 4,569,745 - -1.8 4,569,778 + -1.7 4,569,778 + +1.5 4,569,780 + +1.3 4,569,781 - -0.4 4,569,782 + +0.8 4,569,782 + -0.5 4,569,783 - +0.7 4,569,783 - +0.8 4,569,783 - -0.9 4,569,783 - -1.9 4,569,783 - +0.6 4,569,837 + +0.2 4,569,837 + -0.4 4,569,837 + +0.2 4,569,837 + -0.2 4,569,838 - -1.1 4,569,838 - +0.6 4,569,838 - -1.9 4,569,838 - -0.7 4,569,838 - +0.1 4,569,838 - -1.2 4,569,952 - -2.1 4,570,106 + Psyr_3834 0.16 +2.1 4,570,106 + Psyr_3834 0.16 +2.1 4,570,156 + Psyr_3834 0.19 -1.7 4,570,156 + Psyr_3834 0.19 -1.3 4,570,156 + Psyr_3834 0.19 +0.1 4,570,157 - Psyr_3834 0.19 +2.1 4,570,157 - Psyr_3834 0.19 -0.9 4,570,157 - Psyr_3834 0.19 -0.5 4,570,185 + Psyr_3834 0.21 -1.2 4,570,185 + Psyr_3834 0.21 -0.9 4,570,186 - Psyr_3834 0.21 +1.2 4,570,275 + Psyr_3834 0.26 +2.7 4,570,408 - Psyr_3834 0.34 -0.8 4,570,408 - Psyr_3834 0.34 -1.8 4,570,408 - Psyr_3834 0.34 -0.2 4,570,606 + Psyr_3834 0.46 +0.6 4,570,737 + Psyr_3834 0.53 -1.9 4,570,737 + Psyr_3834 0.53 -0.7 4,570,738 - Psyr_3834 0.53 -1.7 4,570,738 - Psyr_3834 0.53 -2.0 4,570,738 - Psyr_3834 0.53 -0.7 4,570,738 - Psyr_3834 0.53 -0.4 4,570,738 - Psyr_3834 0.53 -1.7 4,570,738 - Psyr_3834 0.53 +1.9 4,570,747 - Psyr_3834 0.54 +0.5 4,570,888 - Psyr_3834 0.62 -0.9 4,570,888 - Psyr_3834 0.62 -1.6 4,571,016 + Psyr_3834 0.70 +0.3 4,571,016 + Psyr_3834 0.70 -0.4 4,571,016 + Psyr_3834 0.70 +0.1 4,571,016 + Psyr_3834 0.70 -0.0 4,571,016 + Psyr_3834 0.70 -0.5 4,571,016 + Psyr_3834 0.70 -1.7 4,571,017 - Psyr_3834 0.70 -0.2 4,571,017 - Psyr_3834 0.70 +0.6 4,571,017 - Psyr_3834 0.70 +0.0 4,571,202 + Psyr_3834 0.81 +0.1 4,571,202 + Psyr_3834 0.81 -0.5 4,571,202 + Psyr_3834 0.81 -1.3 4,571,273 + Psyr_3834 0.85 +0.6 4,571,274 - Psyr_3834 0.85 -0.8 4,571,274 - Psyr_3834 0.85 -0.7 4,571,274 - Psyr_3834 0.85 -0.3 4,571,274 - Psyr_3834 0.85 -1.1 4,571,274 - Psyr_3834 0.85 -1.1 4,571,274 - Psyr_3834 0.85 +0.2 4,571,274 - Psyr_3834 0.85 -0.3 4,571,320 + Psyr_3834 0.88 -1.2 4,571,361 + -1.7 4,571,361 + +1.1 4,571,361 + -1.2 4,571,361 + -1.2 4,571,361 + -0.2 4,571,362 - -0.5 4,571,362 - -1.5 4,571,362 - +0.1 4,571,362 - -1.6 4,571,362 - -2.1 4,571,362 - -3.1 4,571,373 + -0.9 4,571,373 + +0.2 4,571,374 - -0.1 4,571,374 - +1.1 4,571,374 - -0.6 4,571,499 + +1.6 4,571,500 - +0.2 4,571,500 - -0.5 4,571,597 + -0.8 4,571,597 + -0.9 4,571,605 - +0.6 4,571,622 + Psyr_3835 0.16 -1.9 4,571,651 - Psyr_3835 0.34 +0.8 4,571,651 - Psyr_3835 0.34 -0.5 4,571,651 - Psyr_3835 0.34 +3.7 4,571,704 + Psyr_3835 0.67 -1.3 4,571,734 + Psyr_3835 0.85 -0.6 4,571,798 + -0.2 4,571,799 - +1.6 4,571,799 - -2.0 4,571,799 - +0.1 4,571,975 - -0.4 4,571,975 - -0.7 4,572,231 - Psyr_3836 0.21 -0.1 4,572,296 - Psyr_3836 0.24 -0.5 4,572,429 - Psyr_3836 0.32 -0.7 4,572,429 - Psyr_3836 0.32 -0.0
Or see this region's nucleotide sequence