Experiment: KB with Nonanoic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3738 and Psyr_3739 are separated by 177 nucleotides Psyr_3739 and Psyr_3740 are separated by 10 nucleotides Psyr_3740 and Psyr_3741 are separated by 38 nucleotides
Psyr_3738: Psyr_3738 - ATP-dependent DNA helicase RecQ, at 4,452,018 to 4,454,147
_3738
Psyr_3739: Psyr_3739 - conserved hypothetical protein, at 4,454,325 to 4,454,912
_3739
Psyr_3740: Psyr_3740 - Protein of unknown function DUF454, at 4,454,923 to 4,455,336
_3740
Psyr_3741: Psyr_3741 - Polyphosphate:AMP phosphotransferase, at 4,455,375 to 4,456,871
_3741
Position (kb) 4454
4455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4453.447 kb on + strand, within Psyr_3738 at 4453.447 kb on + strand, within Psyr_3738 at 4453.687 kb on + strand, within Psyr_3738 at 4453.687 kb on + strand, within Psyr_3738 at 4453.688 kb on - strand, within Psyr_3738 at 4453.813 kb on + strand, within Psyr_3738 at 4453.813 kb on + strand, within Psyr_3738 at 4454.104 kb on + strand at 4454.120 kb on + strand at 4454.121 kb on - strand at 4454.121 kb on - strand at 4454.125 kb on - strand at 4454.148 kb on - strand at 4454.191 kb on - strand at 4454.192 kb on + strand at 4454.288 kb on - strand at 4454.345 kb on - strand at 4454.400 kb on + strand, within Psyr_3739 at 4454.400 kb on + strand, within Psyr_3739 at 4454.400 kb on + strand, within Psyr_3739 at 4454.401 kb on - strand, within Psyr_3739 at 4454.401 kb on - strand, within Psyr_3739 at 4454.418 kb on + strand, within Psyr_3739 at 4454.419 kb on - strand, within Psyr_3739 at 4454.853 kb on + strand, within Psyr_3739 at 4454.854 kb on - strand at 4454.968 kb on + strand, within Psyr_3740 at 4455.097 kb on + strand, within Psyr_3740 at 4455.097 kb on + strand, within Psyr_3740 at 4455.098 kb on - strand, within Psyr_3740 at 4455.146 kb on - strand, within Psyr_3740 at 4455.184 kb on + strand, within Psyr_3740 at 4455.185 kb on - strand, within Psyr_3740 at 4455.185 kb on - strand, within Psyr_3740 at 4455.289 kb on + strand, within Psyr_3740 at 4455.289 kb on + strand, within Psyr_3740 at 4455.289 kb on + strand, within Psyr_3740 at 4455.289 kb on + strand, within Psyr_3740 at 4455.289 kb on + strand, within Psyr_3740 at 4455.289 kb on + strand, within Psyr_3740 at 4455.289 kb on + strand, within Psyr_3740 at 4455.289 kb on + strand, within Psyr_3740 at 4455.290 kb on - strand, within Psyr_3740 at 4455.290 kb on - strand, within Psyr_3740 at 4455.290 kb on - strand, within Psyr_3740 at 4455.290 kb on - strand, within Psyr_3740 at 4455.290 kb on - strand, within Psyr_3740 at 4455.291 kb on + strand, within Psyr_3740 at 4455.292 kb on - strand, within Psyr_3740 at 4455.292 kb on - strand, within Psyr_3740 at 4455.841 kb on + strand, within Psyr_3741 at 4455.892 kb on + strand, within Psyr_3741
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM remove 4,453,447 + Psyr_3738 0.67 +0.1 4,453,447 + Psyr_3738 0.67 +1.1 4,453,687 + Psyr_3738 0.78 -2.8 4,453,687 + Psyr_3738 0.78 +1.2 4,453,688 - Psyr_3738 0.78 -0.4 4,453,813 + Psyr_3738 0.84 -0.2 4,453,813 + Psyr_3738 0.84 -1.2 4,454,104 + +0.9 4,454,120 + -1.2 4,454,121 - -0.9 4,454,121 - -0.5 4,454,125 - -0.8 4,454,148 - -0.9 4,454,191 - -0.2 4,454,192 + -2.0 4,454,288 - +1.1 4,454,345 - +0.1 4,454,400 + Psyr_3739 0.13 +0.4 4,454,400 + Psyr_3739 0.13 +0.1 4,454,400 + Psyr_3739 0.13 -0.6 4,454,401 - Psyr_3739 0.13 -0.1 4,454,401 - Psyr_3739 0.13 -1.2 4,454,418 + Psyr_3739 0.16 -0.2 4,454,419 - Psyr_3739 0.16 -0.6 4,454,853 + Psyr_3739 0.90 -1.0 4,454,854 - -0.7 4,454,968 + Psyr_3740 0.11 -0.1 4,455,097 + Psyr_3740 0.42 -1.5 4,455,097 + Psyr_3740 0.42 +3.4 4,455,098 - Psyr_3740 0.42 +0.2 4,455,146 - Psyr_3740 0.54 -0.8 4,455,184 + Psyr_3740 0.63 +2.3 4,455,185 - Psyr_3740 0.63 +0.1 4,455,185 - Psyr_3740 0.63 -1.6 4,455,289 + Psyr_3740 0.88 -0.6 4,455,289 + Psyr_3740 0.88 +0.2 4,455,289 + Psyr_3740 0.88 +0.3 4,455,289 + Psyr_3740 0.88 -0.9 4,455,289 + Psyr_3740 0.88 +0.3 4,455,289 + Psyr_3740 0.88 -0.4 4,455,289 + Psyr_3740 0.88 +0.5 4,455,289 + Psyr_3740 0.88 -0.1 4,455,290 - Psyr_3740 0.89 -0.0 4,455,290 - Psyr_3740 0.89 -0.7 4,455,290 - Psyr_3740 0.89 -0.4 4,455,290 - Psyr_3740 0.89 -0.5 4,455,290 - Psyr_3740 0.89 -0.6 4,455,291 + Psyr_3740 0.89 +0.5 4,455,292 - Psyr_3740 0.89 +0.8 4,455,292 - Psyr_3740 0.89 -0.6 4,455,841 + Psyr_3741 0.31 -1.5 4,455,892 + Psyr_3741 0.35 -3.2
Or see this region's nucleotide sequence