Experiment: KB with Nonanoic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3687 and Psyr_3688 are separated by 39 nucleotides Psyr_3688 and Psyr_3689 are separated by 340 nucleotides
Psyr_3687: Psyr_3687 - Protein of unknown function UPF0118, at 4,373,117 to 4,374,190
_3687
Psyr_3688: Psyr_3688 - conserved hypothetical protein, at 4,374,230 to 4,375,333
_3688
Psyr_3689: Psyr_3689 - phosphoribosylformylglycinamidine cyclo-ligase, at 4,375,674 to 4,376,732
_3689
Position (kb) 4374
4375
4376 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4373.449 kb on + strand, within Psyr_3687 at 4373.450 kb on - strand, within Psyr_3687 at 4373.450 kb on - strand, within Psyr_3687 at 4373.450 kb on - strand, within Psyr_3687 at 4373.450 kb on - strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.451 kb on + strand, within Psyr_3687 at 4373.452 kb on - strand, within Psyr_3687 at 4373.452 kb on - strand, within Psyr_3687 at 4373.452 kb on - strand, within Psyr_3687 at 4373.452 kb on - strand, within Psyr_3687 at 4373.452 kb on - strand, within Psyr_3687 at 4373.532 kb on + strand, within Psyr_3687 at 4373.532 kb on + strand, within Psyr_3687 at 4373.574 kb on - strand, within Psyr_3687 at 4373.574 kb on - strand, within Psyr_3687 at 4373.692 kb on - strand, within Psyr_3687 at 4373.759 kb on - strand, within Psyr_3687 at 4373.776 kb on + strand, within Psyr_3687 at 4373.804 kb on - strand, within Psyr_3687 at 4374.078 kb on + strand, within Psyr_3687 at 4374.078 kb on + strand, within Psyr_3687 at 4374.078 kb on + strand, within Psyr_3687 at 4374.079 kb on - strand, within Psyr_3687 at 4374.181 kb on + strand at 4374.232 kb on - strand at 4374.244 kb on - strand at 4374.426 kb on - strand, within Psyr_3688 at 4374.506 kb on + strand, within Psyr_3688 at 4374.507 kb on - strand, within Psyr_3688 at 4375.251 kb on + strand at 4375.252 kb on - strand at 4375.381 kb on + strand at 4375.381 kb on + strand at 4375.382 kb on - strand at 4375.382 kb on - strand at 4375.382 kb on - strand at 4375.434 kb on + strand at 4375.434 kb on + strand at 4375.434 kb on + strand at 4375.435 kb on - strand at 4375.435 kb on - strand at 4375.435 kb on - strand at 4375.435 kb on - strand at 4375.441 kb on + strand at 4375.442 kb on - strand at 4375.482 kb on + strand at 4375.482 kb on + strand at 4375.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM remove 4,373,449 + Psyr_3687 0.31 -0.0 4,373,450 - Psyr_3687 0.31 +0.3 4,373,450 - Psyr_3687 0.31 -0.7 4,373,450 - Psyr_3687 0.31 +0.5 4,373,450 - Psyr_3687 0.31 +0.1 4,373,451 + Psyr_3687 0.31 -0.5 4,373,451 + Psyr_3687 0.31 +1.5 4,373,451 + Psyr_3687 0.31 +1.2 4,373,451 + Psyr_3687 0.31 +2.0 4,373,451 + Psyr_3687 0.31 +1.2 4,373,451 + Psyr_3687 0.31 -1.7 4,373,451 + Psyr_3687 0.31 +0.8 4,373,451 + Psyr_3687 0.31 -0.4 4,373,451 + Psyr_3687 0.31 -0.2 4,373,451 + Psyr_3687 0.31 -0.4 4,373,451 + Psyr_3687 0.31 +1.7 4,373,451 + Psyr_3687 0.31 +1.1 4,373,452 - Psyr_3687 0.31 +0.3 4,373,452 - Psyr_3687 0.31 +0.3 4,373,452 - Psyr_3687 0.31 -1.0 4,373,452 - Psyr_3687 0.31 +0.3 4,373,452 - Psyr_3687 0.31 -0.4 4,373,532 + Psyr_3687 0.39 +0.7 4,373,532 + Psyr_3687 0.39 -0.3 4,373,574 - Psyr_3687 0.43 +3.7 4,373,574 - Psyr_3687 0.43 -0.5 4,373,692 - Psyr_3687 0.54 +1.5 4,373,759 - Psyr_3687 0.60 -0.7 4,373,776 + Psyr_3687 0.61 -0.2 4,373,804 - Psyr_3687 0.64 -0.9 4,374,078 + Psyr_3687 0.89 +1.5 4,374,078 + Psyr_3687 0.89 -0.2 4,374,078 + Psyr_3687 0.89 -0.9 4,374,079 - Psyr_3687 0.90 +0.2 4,374,181 + +0.3 4,374,232 - +0.4 4,374,244 - -1.1 4,374,426 - Psyr_3688 0.18 -3.1 4,374,506 + Psyr_3688 0.25 -0.7 4,374,507 - Psyr_3688 0.25 -0.8 4,375,251 + -0.2 4,375,252 - -0.2 4,375,381 + -0.6 4,375,381 + -0.5 4,375,382 - +1.8 4,375,382 - +0.4 4,375,382 - +1.9 4,375,434 + -0.8 4,375,434 + +1.1 4,375,434 + +0.8 4,375,435 - -0.1 4,375,435 - +0.5 4,375,435 - -0.8 4,375,435 - +0.4 4,375,441 + -0.2 4,375,442 - -0.2 4,375,482 + -0.1 4,375,482 + -1.4 4,375,483 - -0.4
Or see this region's nucleotide sequence