Experiment: KB with Nonanoic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3671 and Psyr_3672 are separated by 98 nucleotides Psyr_3672 and Psyr_3673 are separated by 1 nucleotides Psyr_3673 and Psyr_3674 overlap by 4 nucleotides
Psyr_3671: Psyr_3671 - Major facilitator superfamily, at 4,357,799 to 4,359,007
_3671
Psyr_3672: Psyr_3672 - cobalamin-5'-phosphate synthase, at 4,359,106 to 4,359,837
_3672
Psyr_3673: Psyr_3673 - Phosphoglycerate/bisphosphoglycerate mutase, at 4,359,839 to 4,360,411
_3673
Psyr_3674: Psyr_3674 - Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, at 4,360,408 to 4,361,460
_3674
Position (kb) 4359
4360 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4358.136 kb on - strand, within Psyr_3671 at 4358.141 kb on + strand, within Psyr_3671 at 4358.141 kb on + strand, within Psyr_3671 at 4358.142 kb on - strand, within Psyr_3671 at 4358.142 kb on - strand, within Psyr_3671 at 4358.160 kb on + strand, within Psyr_3671 at 4358.160 kb on + strand, within Psyr_3671 at 4358.217 kb on + strand, within Psyr_3671 at 4358.218 kb on - strand, within Psyr_3671 at 4358.230 kb on + strand, within Psyr_3671 at 4358.260 kb on + strand, within Psyr_3671 at 4358.260 kb on + strand, within Psyr_3671 at 4358.260 kb on + strand, within Psyr_3671 at 4358.261 kb on - strand, within Psyr_3671 at 4358.298 kb on + strand, within Psyr_3671 at 4358.307 kb on - strand, within Psyr_3671 at 4358.325 kb on - strand, within Psyr_3671 at 4358.543 kb on - strand, within Psyr_3671 at 4359.032 kb on + strand at 4359.033 kb on - strand at 4359.033 kb on - strand at 4359.033 kb on - strand at 4359.033 kb on - strand at 4359.033 kb on - strand at 4359.033 kb on - strand at 4359.033 kb on - strand at 4359.033 kb on - strand at 4359.033 kb on - strand at 4359.033 kb on - strand at 4359.033 kb on - strand at 4359.061 kb on + strand at 4359.062 kb on - strand at 4359.168 kb on + strand at 4359.369 kb on - strand, within Psyr_3672 at 4359.369 kb on - strand, within Psyr_3672 at 4359.738 kb on - strand, within Psyr_3672 at 4360.002 kb on + strand, within Psyr_3673 at 4360.002 kb on + strand, within Psyr_3673 at 4360.087 kb on - strand, within Psyr_3673 at 4360.087 kb on - strand, within Psyr_3673
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM remove 4,358,136 - Psyr_3671 0.28 -0.7 4,358,141 + Psyr_3671 0.28 -0.7 4,358,141 + Psyr_3671 0.28 -0.4 4,358,142 - Psyr_3671 0.28 +0.5 4,358,142 - Psyr_3671 0.28 +1.3 4,358,160 + Psyr_3671 0.30 +0.3 4,358,160 + Psyr_3671 0.30 -1.6 4,358,217 + Psyr_3671 0.35 -0.2 4,358,218 - Psyr_3671 0.35 -1.7 4,358,230 + Psyr_3671 0.36 +2.6 4,358,260 + Psyr_3671 0.38 -0.6 4,358,260 + Psyr_3671 0.38 +0.4 4,358,260 + Psyr_3671 0.38 -1.0 4,358,261 - Psyr_3671 0.38 -0.7 4,358,298 + Psyr_3671 0.41 +1.1 4,358,307 - Psyr_3671 0.42 +2.1 4,358,325 - Psyr_3671 0.44 -0.9 4,358,543 - Psyr_3671 0.62 -1.2 4,359,032 + -0.4 4,359,033 - -0.0 4,359,033 - +0.4 4,359,033 - -1.0 4,359,033 - -0.5 4,359,033 - +0.3 4,359,033 - -0.9 4,359,033 - +1.1 4,359,033 - -0.5 4,359,033 - -0.7 4,359,033 - +0.3 4,359,033 - -1.1 4,359,061 + +0.9 4,359,062 - +0.4 4,359,168 + +1.1 4,359,369 - Psyr_3672 0.36 -2.3 4,359,369 - Psyr_3672 0.36 -0.5 4,359,738 - Psyr_3672 0.86 -0.5 4,360,002 + Psyr_3673 0.28 -0.0 4,360,002 + Psyr_3673 0.28 -0.3 4,360,087 - Psyr_3673 0.43 -1.5 4,360,087 - Psyr_3673 0.43 -1.2
Or see this region's nucleotide sequence