Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3379

Experiment: KB with Nonanoic 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3378 and Psyr_3379 overlap by 4 nucleotidesPsyr_3379 and Psyr_3380 overlap by 4 nucleotidesPsyr_3380 and Psyr_3381 overlap by 4 nucleotides Psyr_3378: Psyr_3378 - Fusaric acid resistance protein conserved region, at 4,036,675 to 4,038,762 _3378 Psyr_3379: Psyr_3379 - membrane protein, putative, at 4,038,759 to 4,038,968 _3379 Psyr_3380: Psyr_3380 - Secretion protein HlyD, at 4,038,965 to 4,039,849 _3380 Psyr_3381: Psyr_3381 - RND efflux system, outer membrane lipoprotein, NodT, at 4,039,846 to 4,041,279 _3381 Position (kb) 4038 4039Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4037.977 kb on + strand, within Psyr_3378at 4037.978 kb on - strand, within Psyr_3378at 4038.454 kb on + strand, within Psyr_3378at 4038.739 kb on - strandat 4038.826 kb on - strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.907 kb on + strand, within Psyr_3379at 4038.908 kb on - strand, within Psyr_3379at 4038.908 kb on - strand, within Psyr_3379at 4038.908 kb on - strand, within Psyr_3379at 4038.908 kb on - strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.913 kb on + strand, within Psyr_3379at 4038.914 kb on - strand, within Psyr_3379at 4038.915 kb on + strand, within Psyr_3379at 4038.916 kb on - strand, within Psyr_3379at 4038.916 kb on - strand, within Psyr_3379at 4038.916 kb on - strand, within Psyr_3379at 4038.946 kb on + strand, within Psyr_3379at 4038.946 kb on + strand, within Psyr_3379at 4038.947 kb on - strand, within Psyr_3379at 4039.038 kb on + strandat 4039.038 kb on + strandat 4039.039 kb on - strandat 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.055 kb on + strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.056 kb on - strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.058 kb on + strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.059 kb on - strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.064 kb on + strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.065 kb on - strand, within Psyr_3380at 4039.547 kb on + strand, within Psyr_3380

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM
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4,037,977 + Psyr_3378 0.62 -2.4
4,037,978 - Psyr_3378 0.62 -2.8
4,038,454 + Psyr_3378 0.85 +0.0
4,038,739 - -2.3
4,038,826 - Psyr_3379 0.32 -3.4
4,038,907 + Psyr_3379 0.70 -4.3
4,038,907 + Psyr_3379 0.70 -1.8
4,038,907 + Psyr_3379 0.70 -1.5
4,038,907 + Psyr_3379 0.70 -3.2
4,038,907 + Psyr_3379 0.70 -2.6
4,038,907 + Psyr_3379 0.70 -1.8
4,038,907 + Psyr_3379 0.70 -1.6
4,038,907 + Psyr_3379 0.70 -1.8
4,038,907 + Psyr_3379 0.70 -1.0
4,038,907 + Psyr_3379 0.70 -3.8
4,038,907 + Psyr_3379 0.70 -2.3
4,038,908 - Psyr_3379 0.71 -3.1
4,038,908 - Psyr_3379 0.71 -1.5
4,038,908 - Psyr_3379 0.71 -2.5
4,038,908 - Psyr_3379 0.71 -0.6
4,038,913 + Psyr_3379 0.73 -3.4
4,038,913 + Psyr_3379 0.73 -1.0
4,038,914 - Psyr_3379 0.74 -1.8
4,038,915 + Psyr_3379 0.74 -2.1
4,038,916 - Psyr_3379 0.75 -2.4
4,038,916 - Psyr_3379 0.75 -2.6
4,038,916 - Psyr_3379 0.75 -0.6
4,038,946 + Psyr_3379 0.89 +2.0
4,038,946 + Psyr_3379 0.89 -3.2
4,038,947 - Psyr_3379 0.90 -2.3
4,039,038 + -2.3
4,039,038 + -1.6
4,039,039 - -3.2
4,039,055 + Psyr_3380 0.10 -3.5
4,039,055 + Psyr_3380 0.10 -3.6
4,039,055 + Psyr_3380 0.10 -3.1
4,039,055 + Psyr_3380 0.10 -3.5
4,039,056 - Psyr_3380 0.10 -2.9
4,039,056 - Psyr_3380 0.10 -2.8
4,039,056 - Psyr_3380 0.10 -1.6
4,039,056 - Psyr_3380 0.10 -1.4
4,039,056 - Psyr_3380 0.10 -1.6
4,039,056 - Psyr_3380 0.10 -1.7
4,039,056 - Psyr_3380 0.10 -1.0
4,039,056 - Psyr_3380 0.10 -3.4
4,039,058 + Psyr_3380 0.11 -2.7
4,039,058 + Psyr_3380 0.11 -2.2
4,039,058 + Psyr_3380 0.11 -2.1
4,039,058 + Psyr_3380 0.11 -3.4
4,039,058 + Psyr_3380 0.11 -2.3
4,039,058 + Psyr_3380 0.11 +0.4
4,039,058 + Psyr_3380 0.11 -3.1
4,039,058 + Psyr_3380 0.11 -2.0
4,039,058 + Psyr_3380 0.11 -1.8
4,039,059 - Psyr_3380 0.11 -0.6
4,039,059 - Psyr_3380 0.11 -2.2
4,039,059 - Psyr_3380 0.11 -0.6
4,039,059 - Psyr_3380 0.11 -1.8
4,039,059 - Psyr_3380 0.11 +1.0
4,039,059 - Psyr_3380 0.11 -3.7
4,039,059 - Psyr_3380 0.11 -2.8
4,039,059 - Psyr_3380 0.11 -2.2
4,039,059 - Psyr_3380 0.11 -2.7
4,039,059 - Psyr_3380 0.11 -2.4
4,039,059 - Psyr_3380 0.11 -3.1
4,039,064 + Psyr_3380 0.11 -1.9
4,039,064 + Psyr_3380 0.11 -1.6
4,039,064 + Psyr_3380 0.11 +0.1
4,039,064 + Psyr_3380 0.11 +0.0
4,039,064 + Psyr_3380 0.11 -1.6
4,039,064 + Psyr_3380 0.11 -2.2
4,039,064 + Psyr_3380 0.11 -3.1
4,039,064 + Psyr_3380 0.11 -3.1
4,039,064 + Psyr_3380 0.11 -1.0
4,039,065 - Psyr_3380 0.11 -2.5
4,039,065 - Psyr_3380 0.11 -1.9
4,039,065 - Psyr_3380 0.11 -1.0
4,039,065 - Psyr_3380 0.11 -3.5
4,039,065 - Psyr_3380 0.11 -3.1
4,039,065 - Psyr_3380 0.11 -4.2
4,039,065 - Psyr_3380 0.11 -4.5
4,039,065 - Psyr_3380 0.11 +0.4
4,039,065 - Psyr_3380 0.11 -2.6
4,039,065 - Psyr_3380 0.11 -2.9
4,039,065 - Psyr_3380 0.11 -2.0
4,039,547 + Psyr_3380 0.66 -4.1

Or see this region's nucleotide sequence