Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3367

Experiment: KB with Nonanoic 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3365 and Psyr_3366 are separated by 21 nucleotidesPsyr_3366 and Psyr_3367 are separated by 252 nucleotidesPsyr_3367 and Psyr_3368 are separated by 8 nucleotides Psyr_3365: Psyr_3365 - Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase, at 4,023,774 to 4,024,928 _3365 Psyr_3366: Psyr_3366 - DNA-3-methyladenine glycosylase II, at 4,024,950 to 4,025,615 _3366 Psyr_3367: Psyr_3367 - Iron permease FTR1, at 4,025,868 to 4,026,722 _3367 Psyr_3368: Psyr_3368 - Protein of unknown function DUF451, at 4,026,731 to 4,027,942 _3368 Position (kb) 4025 4026 4027Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4025.086 kb on + strand, within Psyr_3366at 4025.086 kb on + strand, within Psyr_3366at 4025.086 kb on + strand, within Psyr_3366at 4025.086 kb on + strand, within Psyr_3366at 4025.086 kb on + strand, within Psyr_3366at 4025.087 kb on - strand, within Psyr_3366at 4025.087 kb on - strand, within Psyr_3366at 4025.087 kb on - strand, within Psyr_3366at 4025.087 kb on - strand, within Psyr_3366at 4025.087 kb on - strand, within Psyr_3366at 4025.087 kb on - strand, within Psyr_3366at 4025.155 kb on + strand, within Psyr_3366at 4025.155 kb on + strand, within Psyr_3366at 4025.156 kb on - strand, within Psyr_3366at 4025.650 kb on - strandat 4025.650 kb on - strandat 4025.650 kb on - strandat 4025.772 kb on - strandat 4025.847 kb on - strandat 4025.867 kb on + strandat 4025.868 kb on - strandat 4025.868 kb on - strandat 4025.868 kb on - strandat 4025.868 kb on - strandat 4025.918 kb on + strandat 4025.919 kb on - strandat 4025.941 kb on - strandat 4026.216 kb on + strand, within Psyr_3367at 4026.271 kb on + strand, within Psyr_3367at 4026.372 kb on + strand, within Psyr_3367at 4026.618 kb on + strand, within Psyr_3367at 4026.627 kb on + strand, within Psyr_3367at 4026.627 kb on + strand, within Psyr_3367at 4026.628 kb on - strand, within Psyr_3367at 4026.628 kb on - strand, within Psyr_3367at 4026.721 kb on - strandat 4026.737 kb on - strandat 4026.839 kb on + strandat 4026.840 kb on - strandat 4027.094 kb on + strand, within Psyr_3368at 4027.103 kb on - strand, within Psyr_3368at 4027.103 kb on - strand, within Psyr_3368at 4027.229 kb on + strand, within Psyr_3368at 4027.322 kb on + strand, within Psyr_3368at 4027.416 kb on - strand, within Psyr_3368at 4027.653 kb on - strand, within Psyr_3368

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM
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4,025,086 + Psyr_3366 0.20 -0.0
4,025,086 + Psyr_3366 0.20 -1.0
4,025,086 + Psyr_3366 0.20 +1.4
4,025,086 + Psyr_3366 0.20 -1.4
4,025,086 + Psyr_3366 0.20 -0.1
4,025,087 - Psyr_3366 0.21 +0.4
4,025,087 - Psyr_3366 0.21 -0.8
4,025,087 - Psyr_3366 0.21 -1.2
4,025,087 - Psyr_3366 0.21 +1.0
4,025,087 - Psyr_3366 0.21 +0.4
4,025,087 - Psyr_3366 0.21 -0.3
4,025,155 + Psyr_3366 0.31 -0.2
4,025,155 + Psyr_3366 0.31 -1.0
4,025,156 - Psyr_3366 0.31 -0.0
4,025,650 - +0.0
4,025,650 - -2.6
4,025,650 - +2.4
4,025,772 - +1.0
4,025,847 - -2.4
4,025,867 + +0.2
4,025,868 - +1.8
4,025,868 - +1.6
4,025,868 - -3.2
4,025,868 - -1.3
4,025,918 + -0.1
4,025,919 - +0.5
4,025,941 - +0.1
4,026,216 + Psyr_3367 0.41 -1.8
4,026,271 + Psyr_3367 0.47 +0.5
4,026,372 + Psyr_3367 0.59 -1.8
4,026,618 + Psyr_3367 0.88 -1.4
4,026,627 + Psyr_3367 0.89 -0.2
4,026,627 + Psyr_3367 0.89 -1.3
4,026,628 - Psyr_3367 0.89 -0.6
4,026,628 - Psyr_3367 0.89 -0.4
4,026,721 - -0.2
4,026,737 - +0.3
4,026,839 + -2.3
4,026,840 - +0.9
4,027,094 + Psyr_3368 0.30 -0.1
4,027,103 - Psyr_3368 0.31 +0.3
4,027,103 - Psyr_3368 0.31 +0.0
4,027,229 + Psyr_3368 0.41 -0.9
4,027,322 + Psyr_3368 0.49 +0.5
4,027,416 - Psyr_3368 0.57 -1.0
4,027,653 - Psyr_3368 0.76 +1.5

Or see this region's nucleotide sequence