Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3151

Experiment: KB with Nonanoic 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3150 and Psyr_3151 overlap by 4 nucleotidesPsyr_3151 and Psyr_3152 are separated by 50 nucleotidesPsyr_3152 and Psyr_3153 are separated by 427 nucleotides Psyr_3150: Psyr_3150 - type II secretion system protein, at 3,773,948 to 3,775,150 _3150 Psyr_3151: Psyr_3151 - type II secretion system protein E (GspE), at 3,775,147 to 3,776,904 _3151 Psyr_3152: Psyr_3152 - hypothetical protein, at 3,776,955 to 3,777,248 _3152 Psyr_3153: Psyr_3153 - Beta-glucosidase, at 3,777,676 to 3,780,417 _3153 Position (kb) 3775 3776 3777Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3774.591 kb on + strand, within Psyr_3150at 3774.592 kb on - strand, within Psyr_3150at 3774.718 kb on + strand, within Psyr_3150at 3774.719 kb on - strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.761 kb on + strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.762 kb on - strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.763 kb on + strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.764 kb on - strand, within Psyr_3150at 3774.765 kb on + strand, within Psyr_3150at 3774.765 kb on + strand, within Psyr_3150at 3774.765 kb on + strand, within Psyr_3150at 3774.765 kb on + strand, within Psyr_3150at 3774.765 kb on + strand, within Psyr_3150at 3774.766 kb on - strand, within Psyr_3150at 3774.766 kb on - strand, within Psyr_3150at 3774.766 kb on - strand, within Psyr_3150at 3775.389 kb on - strand, within Psyr_3151at 3775.538 kb on + strand, within Psyr_3151at 3775.538 kb on + strand, within Psyr_3151at 3775.538 kb on + strand, within Psyr_3151at 3775.538 kb on + strand, within Psyr_3151at 3775.538 kb on + strand, within Psyr_3151at 3775.573 kb on - strand, within Psyr_3151at 3775.768 kb on - strand, within Psyr_3151at 3775.781 kb on + strand, within Psyr_3151at 3775.847 kb on + strand, within Psyr_3151at 3775.847 kb on + strand, within Psyr_3151at 3775.848 kb on - strand, within Psyr_3151at 3775.848 kb on - strand, within Psyr_3151at 3775.848 kb on - strand, within Psyr_3151at 3776.415 kb on - strand, within Psyr_3151at 3776.573 kb on + strand, within Psyr_3151at 3776.626 kb on + strand, within Psyr_3151at 3776.722 kb on + strand, within Psyr_3151at 3776.733 kb on + strandat 3776.734 kb on - strandat 3776.904 kb on + strandat 3776.904 kb on + strandat 3776.904 kb on + strandat 3776.904 kb on + strandat 3776.904 kb on + strandat 3776.904 kb on + strandat 3776.904 kb on + strandat 3776.904 kb on + strandat 3776.904 kb on + strandat 3776.904 kb on + strandat 3776.904 kb on + strandat 3776.905 kb on - strandat 3776.905 kb on - strandat 3776.905 kb on - strandat 3776.905 kb on - strandat 3776.905 kb on - strandat 3776.905 kb on - strandat 3776.905 kb on - strandat 3776.905 kb on - strandat 3776.907 kb on + strandat 3776.907 kb on + strandat 3776.907 kb on + strandat 3776.907 kb on + strandat 3776.908 kb on - strandat 3776.908 kb on - strandat 3776.908 kb on - strandat 3776.908 kb on - strandat 3776.908 kb on - strandat 3777.235 kb on + strandat 3777.236 kb on - strandat 3777.388 kb on + strandat 3777.389 kb on - strandat 3777.389 kb on - strandat 3777.389 kb on - strandat 3777.389 kb on - strandat 3777.399 kb on + strandat 3777.399 kb on + strandat 3777.399 kb on + strandat 3777.399 kb on + strandat 3777.399 kb on + strandat 3777.400 kb on - strandat 3777.400 kb on - strandat 3777.400 kb on - strandat 3777.400 kb on - strandat 3777.400 kb on - strandat 3777.400 kb on - strandat 3777.411 kb on + strandat 3777.412 kb on - strandat 3777.418 kb on - strandat 3777.418 kb on - strandat 3777.542 kb on + strandat 3777.609 kb on + strandat 3777.609 kb on + strandat 3777.621 kb on + strandat 3777.676 kb on - strandat 3777.676 kb on - strandat 3777.764 kb on + strandat 3777.764 kb on + strandat 3777.889 kb on + strandat 3777.890 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM
remove
3,774,591 + Psyr_3150 0.53 -2.7
3,774,592 - Psyr_3150 0.54 +0.2
3,774,718 + Psyr_3150 0.64 +2.1
3,774,719 - Psyr_3150 0.64 +1.1
3,774,761 + Psyr_3150 0.68 -0.9
3,774,761 + Psyr_3150 0.68 -0.6
3,774,761 + Psyr_3150 0.68 -1.3
3,774,761 + Psyr_3150 0.68 -2.1
3,774,761 + Psyr_3150 0.68 -0.1
3,774,761 + Psyr_3150 0.68 -1.2
3,774,761 + Psyr_3150 0.68 -0.8
3,774,761 + Psyr_3150 0.68 +0.1
3,774,761 + Psyr_3150 0.68 +1.1
3,774,761 + Psyr_3150 0.68 -0.2
3,774,761 + Psyr_3150 0.68 -1.5
3,774,761 + Psyr_3150 0.68 -0.8
3,774,761 + Psyr_3150 0.68 +0.8
3,774,761 + Psyr_3150 0.68 +0.3
3,774,761 + Psyr_3150 0.68 -1.7
3,774,761 + Psyr_3150 0.68 -1.3
3,774,761 + Psyr_3150 0.68 +2.4
3,774,761 + Psyr_3150 0.68 -0.9
3,774,761 + Psyr_3150 0.68 -2.8
3,774,761 + Psyr_3150 0.68 -0.5
3,774,761 + Psyr_3150 0.68 -1.4
3,774,761 + Psyr_3150 0.68 -1.2
3,774,761 + Psyr_3150 0.68 +0.9
3,774,761 + Psyr_3150 0.68 -2.0
3,774,761 + Psyr_3150 0.68 +3.1
3,774,761 + Psyr_3150 0.68 -1.2
3,774,761 + Psyr_3150 0.68 +1.3
3,774,761 + Psyr_3150 0.68 -0.2
3,774,762 - Psyr_3150 0.68 +0.9
3,774,762 - Psyr_3150 0.68 +0.7
3,774,762 - Psyr_3150 0.68 -2.2
3,774,762 - Psyr_3150 0.68 +0.2
3,774,762 - Psyr_3150 0.68 +4.2
3,774,762 - Psyr_3150 0.68 -0.9
3,774,762 - Psyr_3150 0.68 +0.3
3,774,762 - Psyr_3150 0.68 -2.0
3,774,762 - Psyr_3150 0.68 -0.4
3,774,762 - Psyr_3150 0.68 +0.2
3,774,762 - Psyr_3150 0.68 +0.4
3,774,762 - Psyr_3150 0.68 -0.4
3,774,762 - Psyr_3150 0.68 -2.5
3,774,762 - Psyr_3150 0.68 +1.0
3,774,762 - Psyr_3150 0.68 +1.5
3,774,762 - Psyr_3150 0.68 +3.7
3,774,762 - Psyr_3150 0.68 +0.1
3,774,763 + Psyr_3150 0.68 -2.9
3,774,763 + Psyr_3150 0.68 +0.3
3,774,763 + Psyr_3150 0.68 -3.2
3,774,763 + Psyr_3150 0.68 -0.9
3,774,763 + Psyr_3150 0.68 +1.8
3,774,763 + Psyr_3150 0.68 +0.4
3,774,763 + Psyr_3150 0.68 +0.8
3,774,763 + Psyr_3150 0.68 -0.2
3,774,763 + Psyr_3150 0.68 +0.6
3,774,763 + Psyr_3150 0.68 -0.5
3,774,763 + Psyr_3150 0.68 +0.2
3,774,763 + Psyr_3150 0.68 +0.5
3,774,763 + Psyr_3150 0.68 -0.6
3,774,763 + Psyr_3150 0.68 +0.5
3,774,764 - Psyr_3150 0.68 -0.9
3,774,764 - Psyr_3150 0.68 +1.1
3,774,764 - Psyr_3150 0.68 -0.3
3,774,764 - Psyr_3150 0.68 +0.2
3,774,764 - Psyr_3150 0.68 -0.1
3,774,764 - Psyr_3150 0.68 +2.0
3,774,764 - Psyr_3150 0.68 -2.6
3,774,764 - Psyr_3150 0.68 +0.2
3,774,764 - Psyr_3150 0.68 +0.6
3,774,765 + Psyr_3150 0.68 -2.0
3,774,765 + Psyr_3150 0.68 +0.9
3,774,765 + Psyr_3150 0.68 +1.1
3,774,765 + Psyr_3150 0.68 +0.1
3,774,765 + Psyr_3150 0.68 -0.9
3,774,766 - Psyr_3150 0.68 -0.0
3,774,766 - Psyr_3150 0.68 +1.8
3,774,766 - Psyr_3150 0.68 -0.9
3,775,389 - Psyr_3151 0.14 -0.9
3,775,538 + Psyr_3151 0.22 +0.3
3,775,538 + Psyr_3151 0.22 -0.2
3,775,538 + Psyr_3151 0.22 -2.2
3,775,538 + Psyr_3151 0.22 +0.2
3,775,538 + Psyr_3151 0.22 -0.5
3,775,573 - Psyr_3151 0.24 +0.2
3,775,768 - Psyr_3151 0.35 -1.5
3,775,781 + Psyr_3151 0.36 -0.9
3,775,847 + Psyr_3151 0.40 -2.8
3,775,847 + Psyr_3151 0.40 -1.4
3,775,848 - Psyr_3151 0.40 -0.1
3,775,848 - Psyr_3151 0.40 +0.1
3,775,848 - Psyr_3151 0.40 +0.1
3,776,415 - Psyr_3151 0.72 -0.6
3,776,573 + Psyr_3151 0.81 -0.5
3,776,626 + Psyr_3151 0.84 -1.0
3,776,722 + Psyr_3151 0.90 -1.3
3,776,733 + +0.9
3,776,734 - -3.1
3,776,904 + -0.0
3,776,904 + +3.1
3,776,904 + -2.5
3,776,904 + +1.1
3,776,904 + -1.2
3,776,904 + +3.4
3,776,904 + +0.3
3,776,904 + +0.0
3,776,904 + +0.6
3,776,904 + -0.6
3,776,904 + +0.1
3,776,905 - +0.0
3,776,905 - -1.9
3,776,905 - +3.1
3,776,905 - +0.5
3,776,905 - -0.0
3,776,905 - +0.2
3,776,905 - -0.2
3,776,905 - -0.8
3,776,907 + +2.1
3,776,907 + -0.2
3,776,907 + -0.3
3,776,907 + -1.1
3,776,908 - -1.6
3,776,908 - -2.4
3,776,908 - +1.5
3,776,908 - +1.3
3,776,908 - +0.6
3,777,235 + +1.1
3,777,236 - +4.5
3,777,388 + +0.8
3,777,389 - +0.1
3,777,389 - +3.5
3,777,389 - -0.7
3,777,389 - +0.3
3,777,399 + -0.8
3,777,399 + -1.1
3,777,399 + -1.6
3,777,399 + +0.1
3,777,399 + -1.7
3,777,400 - -2.8
3,777,400 - +0.7
3,777,400 - +0.8
3,777,400 - +0.8
3,777,400 - +1.6
3,777,400 - +0.1
3,777,411 + +0.9
3,777,412 - +0.5
3,777,418 - +0.5
3,777,418 - -0.2
3,777,542 + -0.6
3,777,609 + +2.1
3,777,609 + -2.2
3,777,621 + +0.8
3,777,676 - -2.1
3,777,676 - -2.8
3,777,764 + -0.8
3,777,764 + +2.1
3,777,889 + -0.5
3,777,890 - +0.5

Or see this region's nucleotide sequence