Experiment: KB with Nonanoic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1807 and Psyr_1808 are separated by 41 nucleotides Psyr_1808 and Psyr_1809 overlap by 4 nucleotides
Psyr_1807: Psyr_1807 - Allantoicase, at 2,080,620 to 2,081,615
_1807
Psyr_1808: Psyr_1808 - conserved hypothetical protein, at 2,081,657 to 2,082,172
_1808
Psyr_1809: Psyr_1809 - Polysaccharide deacetylase, at 2,082,169 to 2,083,098
_1809
Position (kb)
2081
2082
2083 Strain fitness (log2 ratio)
-1
0
1
2 at 2080.675 kb on - strand at 2080.859 kb on + strand, within Psyr_1807 at 2080.860 kb on - strand, within Psyr_1807 at 2080.860 kb on - strand, within Psyr_1807 at 2080.860 kb on - strand, within Psyr_1807 at 2080.860 kb on - strand, within Psyr_1807 at 2080.860 kb on - strand, within Psyr_1807 at 2081.023 kb on + strand, within Psyr_1807 at 2081.023 kb on + strand, within Psyr_1807 at 2081.129 kb on - strand, within Psyr_1807 at 2081.767 kb on + strand, within Psyr_1808 at 2081.767 kb on + strand, within Psyr_1808 at 2081.768 kb on - strand, within Psyr_1808 at 2081.768 kb on - strand, within Psyr_1808 at 2081.824 kb on - strand, within Psyr_1808 at 2081.824 kb on - strand, within Psyr_1808 at 2081.824 kb on - strand, within Psyr_1808 at 2082.099 kb on + strand, within Psyr_1808 at 2082.099 kb on + strand, within Psyr_1808 at 2082.099 kb on + strand, within Psyr_1808 at 2082.099 kb on + strand, within Psyr_1808 at 2082.100 kb on - strand, within Psyr_1808 at 2082.100 kb on - strand, within Psyr_1808 at 2082.100 kb on - strand, within Psyr_1808 at 2082.100 kb on - strand, within Psyr_1808 at 2082.368 kb on + strand, within Psyr_1809 at 2082.396 kb on - strand, within Psyr_1809 at 2082.702 kb on - strand, within Psyr_1809 at 2082.876 kb on - strand, within Psyr_1809 at 2082.972 kb on + strand, within Psyr_1809 at 2082.972 kb on + strand, within Psyr_1809 at 2082.995 kb on + strand, within Psyr_1809 at 2083.139 kb on + strand at 2083.139 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM remove 2,080,675 - -0.6 2,080,859 + Psyr_1807 0.24 +1.8 2,080,860 - Psyr_1807 0.24 +0.3 2,080,860 - Psyr_1807 0.24 +0.7 2,080,860 - Psyr_1807 0.24 +0.2 2,080,860 - Psyr_1807 0.24 +0.7 2,080,860 - Psyr_1807 0.24 -1.0 2,081,023 + Psyr_1807 0.40 +1.4 2,081,023 + Psyr_1807 0.40 -0.1 2,081,129 - Psyr_1807 0.51 +0.0 2,081,767 + Psyr_1808 0.21 -0.2 2,081,767 + Psyr_1808 0.21 -0.4 2,081,768 - Psyr_1808 0.22 -0.1 2,081,768 - Psyr_1808 0.22 -0.2 2,081,824 - Psyr_1808 0.32 +1.3 2,081,824 - Psyr_1808 0.32 -0.4 2,081,824 - Psyr_1808 0.32 +1.7 2,082,099 + Psyr_1808 0.86 -0.4 2,082,099 + Psyr_1808 0.86 -0.8 2,082,099 + Psyr_1808 0.86 -0.4 2,082,099 + Psyr_1808 0.86 -0.3 2,082,100 - Psyr_1808 0.86 -0.0 2,082,100 - Psyr_1808 0.86 +1.5 2,082,100 - Psyr_1808 0.86 +1.1 2,082,100 - Psyr_1808 0.86 +1.3 2,082,368 + Psyr_1809 0.21 +0.6 2,082,396 - Psyr_1809 0.24 -0.8 2,082,702 - Psyr_1809 0.57 -1.0 2,082,876 - Psyr_1809 0.76 +1.5 2,082,972 + Psyr_1809 0.86 -0.8 2,082,972 + Psyr_1809 0.86 +1.7 2,082,995 + Psyr_1809 0.89 +0.0 2,083,139 + -0.9 2,083,139 + +1.3
Or see this region's nucleotide sequence