Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0849

Experiment: KB with Nonanoic 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0848 and Psyr_0849 are separated by 170 nucleotidesPsyr_0849 and Psyr_0850 are separated by 69 nucleotides Psyr_0848: Psyr_0848 - ketol-acid reductoisomerase, at 960,438 to 961,454 _0848 Psyr_0849: Psyr_0849 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 961,625 to 962,470 _0849 Psyr_0850: Psyr_0850 - Oxidoreductase, molybdopterin binding protein, at 962,540 to 963,553 _0850 Position (kb) 961 962 963Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 960.702 kb on + strand, within Psyr_0848at 960.702 kb on + strand, within Psyr_0848at 960.702 kb on + strand, within Psyr_0848at 960.702 kb on + strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.703 kb on - strand, within Psyr_0848at 960.774 kb on + strand, within Psyr_0848at 960.775 kb on - strand, within Psyr_0848at 960.937 kb on - strand, within Psyr_0848at 961.107 kb on + strand, within Psyr_0848at 961.107 kb on + strand, within Psyr_0848at 961.107 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.152 kb on + strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.153 kb on - strand, within Psyr_0848at 961.179 kb on + strand, within Psyr_0848at 961.179 kb on + strand, within Psyr_0848at 961.179 kb on + strand, within Psyr_0848at 961.180 kb on - strand, within Psyr_0848at 961.212 kb on + strand, within Psyr_0848at 961.212 kb on + strand, within Psyr_0848at 961.212 kb on + strand, within Psyr_0848at 961.213 kb on - strand, within Psyr_0848at 961.355 kb on + strandat 961.453 kb on - strandat 961.478 kb on + strandat 961.479 kb on - strandat 961.490 kb on - strandat 961.546 kb on - strandat 961.547 kb on + strandat 961.547 kb on + strandat 961.547 kb on + strandat 961.547 kb on + strandat 961.548 kb on - strandat 961.548 kb on - strandat 961.548 kb on - strandat 961.617 kb on + strandat 961.677 kb on + strandat 961.678 kb on - strandat 961.682 kb on - strandat 961.682 kb on - strandat 961.745 kb on + strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.746 kb on - strand, within Psyr_0849at 961.793 kb on + strand, within Psyr_0849at 961.862 kb on + strand, within Psyr_0849at 961.862 kb on + strand, within Psyr_0849at 961.863 kb on - strand, within Psyr_0849at 961.863 kb on - strand, within Psyr_0849at 961.863 kb on - strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.075 kb on + strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.076 kb on - strand, within Psyr_0849at 962.079 kb on + strand, within Psyr_0849at 962.113 kb on + strand, within Psyr_0849at 962.113 kb on + strand, within Psyr_0849at 962.114 kb on - strand, within Psyr_0849at 962.142 kb on - strand, within Psyr_0849at 962.178 kb on + strand, within Psyr_0849at 962.179 kb on - strand, within Psyr_0849at 962.179 kb on - strand, within Psyr_0849at 962.294 kb on + strand, within Psyr_0849at 962.294 kb on + strand, within Psyr_0849at 962.294 kb on + strand, within Psyr_0849at 962.294 kb on + strand, within Psyr_0849at 962.294 kb on + strand, within Psyr_0849at 962.294 kb on + strand, within Psyr_0849at 962.377 kb on - strand, within Psyr_0849at 962.410 kb on - strandat 962.452 kb on - strandat 962.452 kb on - strandat 962.469 kb on - strandat 962.492 kb on + strandat 962.493 kb on - strandat 962.500 kb on - strandat 962.504 kb on + strandat 962.505 kb on - strandat 962.505 kb on - strandat 962.505 kb on - strandat 962.603 kb on + strandat 962.603 kb on + strandat 962.604 kb on - strandat 962.604 kb on - strandat 962.604 kb on - strandat 962.816 kb on + strand, within Psyr_0850at 962.816 kb on + strand, within Psyr_0850at 962.817 kb on - strand, within Psyr_0850at 962.817 kb on - strand, within Psyr_0850at 962.828 kb on + strand, within Psyr_0850at 962.828 kb on + strand, within Psyr_0850at 962.828 kb on + strand, within Psyr_0850at 962.829 kb on - strand, within Psyr_0850at 962.829 kb on - strand, within Psyr_0850at 962.904 kb on + strand, within Psyr_0850at 962.904 kb on + strand, within Psyr_0850at 962.904 kb on + strand, within Psyr_0850at 962.905 kb on - strand, within Psyr_0850at 962.905 kb on - strand, within Psyr_0850at 962.905 kb on - strand, within Psyr_0850at 962.905 kb on - strand, within Psyr_0850at 962.961 kb on - strand, within Psyr_0850at 962.981 kb on + strand, within Psyr_0850at 962.981 kb on + strand, within Psyr_0850at 962.981 kb on + strand, within Psyr_0850at 963.060 kb on + strand, within Psyr_0850at 963.061 kb on - strand, within Psyr_0850at 963.083 kb on + strand, within Psyr_0850at 963.083 kb on + strand, within Psyr_0850at 963.083 kb on + strand, within Psyr_0850at 963.083 kb on + strand, within Psyr_0850at 963.083 kb on + strand, within Psyr_0850at 963.083 kb on + strand, within Psyr_0850at 963.083 kb on + strand, within Psyr_0850at 963.083 kb on + strand, within Psyr_0850at 963.083 kb on + strand, within Psyr_0850at 963.084 kb on - strand, within Psyr_0850at 963.084 kb on - strand, within Psyr_0850at 963.084 kb on - strand, within Psyr_0850at 963.084 kb on - strand, within Psyr_0850at 963.161 kb on + strand, within Psyr_0850at 963.161 kb on + strand, within Psyr_0850at 963.161 kb on + strand, within Psyr_0850at 963.162 kb on - strand, within Psyr_0850at 963.162 kb on - strand, within Psyr_0850at 963.162 kb on - strand, within Psyr_0850at 963.162 kb on - strand, within Psyr_0850at 963.162 kb on - strand, within Psyr_0850at 963.162 kb on - strand, within Psyr_0850at 963.165 kb on + strand, within Psyr_0850at 963.165 kb on + strand, within Psyr_0850at 963.165 kb on + strand, within Psyr_0850at 963.165 kb on + strand, within Psyr_0850at 963.165 kb on + strand, within Psyr_0850at 963.165 kb on + strand, within Psyr_0850at 963.166 kb on - strand, within Psyr_0850at 963.166 kb on - strand, within Psyr_0850at 963.166 kb on - strand, within Psyr_0850at 963.166 kb on - strand, within Psyr_0850at 963.166 kb on - strand, within Psyr_0850at 963.166 kb on - strand, within Psyr_0850at 963.166 kb on - strand, within Psyr_0850at 963.166 kb on - strand, within Psyr_0850at 963.166 kb on - strand, within Psyr_0850at 963.224 kb on + strand, within Psyr_0850at 963.224 kb on + strand, within Psyr_0850at 963.224 kb on + strand, within Psyr_0850at 963.224 kb on + strand, within Psyr_0850at 963.224 kb on + strand, within Psyr_0850at 963.225 kb on - strand, within Psyr_0850at 963.225 kb on - strand, within Psyr_0850at 963.225 kb on - strand, within Psyr_0850at 963.225 kb on - strand, within Psyr_0850at 963.225 kb on - strand, within Psyr_0850at 963.225 kb on - strand, within Psyr_0850at 963.225 kb on - strand, within Psyr_0850at 963.225 kb on - strand, within Psyr_0850at 963.284 kb on + strand, within Psyr_0850at 963.285 kb on - strand, within Psyr_0850at 963.285 kb on - strand, within Psyr_0850at 963.383 kb on + strand, within Psyr_0850at 963.383 kb on + strand, within Psyr_0850at 963.383 kb on + strand, within Psyr_0850at 963.383 kb on + strand, within Psyr_0850at 963.384 kb on - strand, within Psyr_0850at 963.384 kb on - strand, within Psyr_0850

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM
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960,702 + Psyr_0848 0.26 +0.6
960,702 + Psyr_0848 0.26 -0.1
960,702 + Psyr_0848 0.26 +2.2
960,702 + Psyr_0848 0.26 -0.0
960,703 - Psyr_0848 0.26 +0.8
960,703 - Psyr_0848 0.26 -2.2
960,703 - Psyr_0848 0.26 -0.3
960,703 - Psyr_0848 0.26 -0.1
960,703 - Psyr_0848 0.26 -0.0
960,703 - Psyr_0848 0.26 +0.5
960,703 - Psyr_0848 0.26 -0.3
960,774 + Psyr_0848 0.33 +0.7
960,775 - Psyr_0848 0.33 +1.2
960,937 - Psyr_0848 0.49 -1.1
961,107 + Psyr_0848 0.66 -1.0
961,107 + Psyr_0848 0.66 -0.7
961,107 + Psyr_0848 0.66 -0.1
961,152 + Psyr_0848 0.70 -0.4
961,152 + Psyr_0848 0.70 -0.4
961,152 + Psyr_0848 0.70 -1.0
961,152 + Psyr_0848 0.70 -0.9
961,152 + Psyr_0848 0.70 -1.3
961,152 + Psyr_0848 0.70 +1.2
961,153 - Psyr_0848 0.70 +0.9
961,153 - Psyr_0848 0.70 -1.3
961,153 - Psyr_0848 0.70 +3.2
961,153 - Psyr_0848 0.70 +0.1
961,179 + Psyr_0848 0.73 -0.1
961,179 + Psyr_0848 0.73 -0.7
961,179 + Psyr_0848 0.73 -1.0
961,180 - Psyr_0848 0.73 -0.5
961,212 + Psyr_0848 0.76 -0.7
961,212 + Psyr_0848 0.76 +1.2
961,212 + Psyr_0848 0.76 +1.2
961,213 - Psyr_0848 0.76 +0.4
961,355 + +0.2
961,453 - -0.3
961,478 + +0.1
961,479 - +0.1
961,490 - +1.7
961,546 - -0.2
961,547 + +2.6
961,547 + -1.1
961,547 + +2.8
961,547 + +1.0
961,548 - +0.4
961,548 - -1.3
961,548 - -0.1
961,617 + -2.1
961,677 + -1.2
961,678 - -0.6
961,682 - -0.7
961,682 - -0.6
961,745 + Psyr_0849 0.14 -1.3
961,746 - Psyr_0849 0.14 -0.8
961,746 - Psyr_0849 0.14 -1.5
961,746 - Psyr_0849 0.14 -0.3
961,793 + Psyr_0849 0.20 +0.5
961,862 + Psyr_0849 0.28 -2.5
961,862 + Psyr_0849 0.28 -0.1
961,863 - Psyr_0849 0.28 -1.4
961,863 - Psyr_0849 0.28 -0.9
961,863 - Psyr_0849 0.28 -1.3
962,075 + Psyr_0849 0.53 -3.6
962,075 + Psyr_0849 0.53 -2.5
962,075 + Psyr_0849 0.53 -2.0
962,075 + Psyr_0849 0.53 -2.5
962,075 + Psyr_0849 0.53 +0.0
962,075 + Psyr_0849 0.53 -0.3
962,075 + Psyr_0849 0.53 -2.8
962,075 + Psyr_0849 0.53 -3.9
962,075 + Psyr_0849 0.53 -0.5
962,075 + Psyr_0849 0.53 +0.5
962,075 + Psyr_0849 0.53 -0.3
962,075 + Psyr_0849 0.53 +1.2
962,075 + Psyr_0849 0.53 -0.3
962,076 - Psyr_0849 0.53 -1.6
962,076 - Psyr_0849 0.53 -0.2
962,076 - Psyr_0849 0.53 +2.8
962,076 - Psyr_0849 0.53 -0.7
962,076 - Psyr_0849 0.53 -0.9
962,076 - Psyr_0849 0.53 -2.9
962,076 - Psyr_0849 0.53 -3.1
962,076 - Psyr_0849 0.53 -3.1
962,076 - Psyr_0849 0.53 -2.0
962,076 - Psyr_0849 0.53 +0.0
962,079 + Psyr_0849 0.54 -1.0
962,113 + Psyr_0849 0.58 -2.3
962,113 + Psyr_0849 0.58 -1.8
962,114 - Psyr_0849 0.58 -1.3
962,142 - Psyr_0849 0.61 -2.6
962,178 + Psyr_0849 0.65 -1.9
962,179 - Psyr_0849 0.65 +1.2
962,179 - Psyr_0849 0.65 -1.8
962,294 + Psyr_0849 0.79 -2.5
962,294 + Psyr_0849 0.79 -1.3
962,294 + Psyr_0849 0.79 -2.1
962,294 + Psyr_0849 0.79 -1.5
962,294 + Psyr_0849 0.79 -1.0
962,294 + Psyr_0849 0.79 +1.1
962,377 - Psyr_0849 0.89 -2.0
962,410 - +1.2
962,452 - -2.3
962,452 - -0.6
962,469 - +2.2
962,492 + -0.1
962,493 - -2.1
962,500 - -2.3
962,504 + +0.2
962,505 - +2.1
962,505 - +0.7
962,505 - +0.5
962,603 + -0.3
962,603 + +0.2
962,604 - -0.3
962,604 - +0.5
962,604 - +0.3
962,816 + Psyr_0850 0.27 +2.8
962,816 + Psyr_0850 0.27 +0.7
962,817 - Psyr_0850 0.27 -0.0
962,817 - Psyr_0850 0.27 -0.8
962,828 + Psyr_0850 0.28 -0.3
962,828 + Psyr_0850 0.28 -0.2
962,828 + Psyr_0850 0.28 +1.1
962,829 - Psyr_0850 0.29 +0.2
962,829 - Psyr_0850 0.29 +0.5
962,904 + Psyr_0850 0.36 -1.0
962,904 + Psyr_0850 0.36 +0.4
962,904 + Psyr_0850 0.36 +0.8
962,905 - Psyr_0850 0.36 -2.8
962,905 - Psyr_0850 0.36 +0.4
962,905 - Psyr_0850 0.36 +1.5
962,905 - Psyr_0850 0.36 +0.9
962,961 - Psyr_0850 0.42 -0.2
962,981 + Psyr_0850 0.43 -0.4
962,981 + Psyr_0850 0.43 -1.0
962,981 + Psyr_0850 0.43 +0.7
963,060 + Psyr_0850 0.51 -0.3
963,061 - Psyr_0850 0.51 +1.0
963,083 + Psyr_0850 0.54 -0.2
963,083 + Psyr_0850 0.54 +1.2
963,083 + Psyr_0850 0.54 +0.2
963,083 + Psyr_0850 0.54 -0.3
963,083 + Psyr_0850 0.54 +2.0
963,083 + Psyr_0850 0.54 +1.0
963,083 + Psyr_0850 0.54 +0.7
963,083 + Psyr_0850 0.54 +0.3
963,083 + Psyr_0850 0.54 +2.8
963,084 - Psyr_0850 0.54 -3.2
963,084 - Psyr_0850 0.54 +0.1
963,084 - Psyr_0850 0.54 +0.4
963,084 - Psyr_0850 0.54 -0.1
963,161 + Psyr_0850 0.61 -0.4
963,161 + Psyr_0850 0.61 +0.1
963,161 + Psyr_0850 0.61 -0.5
963,162 - Psyr_0850 0.61 -2.5
963,162 - Psyr_0850 0.61 +0.5
963,162 - Psyr_0850 0.61 +0.2
963,162 - Psyr_0850 0.61 +0.3
963,162 - Psyr_0850 0.61 -0.1
963,162 - Psyr_0850 0.61 -0.2
963,165 + Psyr_0850 0.62 +0.1
963,165 + Psyr_0850 0.62 +1.5
963,165 + Psyr_0850 0.62 -2.5
963,165 + Psyr_0850 0.62 -1.7
963,165 + Psyr_0850 0.62 -0.8
963,165 + Psyr_0850 0.62 -0.0
963,166 - Psyr_0850 0.62 -0.6
963,166 - Psyr_0850 0.62 -1.0
963,166 - Psyr_0850 0.62 -1.0
963,166 - Psyr_0850 0.62 +0.4
963,166 - Psyr_0850 0.62 +0.5
963,166 - Psyr_0850 0.62 +0.6
963,166 - Psyr_0850 0.62 -0.4
963,166 - Psyr_0850 0.62 -0.2
963,166 - Psyr_0850 0.62 -1.0
963,224 + Psyr_0850 0.67 +0.1
963,224 + Psyr_0850 0.67 -1.4
963,224 + Psyr_0850 0.67 +0.1
963,224 + Psyr_0850 0.67 +1.2
963,224 + Psyr_0850 0.67 +1.5
963,225 - Psyr_0850 0.68 -0.6
963,225 - Psyr_0850 0.68 -0.5
963,225 - Psyr_0850 0.68 +0.1
963,225 - Psyr_0850 0.68 -0.3
963,225 - Psyr_0850 0.68 -0.7
963,225 - Psyr_0850 0.68 -2.1
963,225 - Psyr_0850 0.68 +1.2
963,225 - Psyr_0850 0.68 +4.4
963,284 + Psyr_0850 0.73 +0.9
963,285 - Psyr_0850 0.73 +0.1
963,285 - Psyr_0850 0.73 -1.0
963,383 + Psyr_0850 0.83 +0.9
963,383 + Psyr_0850 0.83 -2.2
963,383 + Psyr_0850 0.83 +0.6
963,383 + Psyr_0850 0.83 -0.7
963,384 - Psyr_0850 0.83 +3.8
963,384 - Psyr_0850 0.83 +0.2

Or see this region's nucleotide sequence