Experiment: KB with Nonanoic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0570 and Psyr_0571 are separated by 0 nucleotides Psyr_0571 and Psyr_0572 are separated by 93 nucleotides Psyr_0572 and Psyr_0573 are separated by 12 nucleotides
Psyr_0570: Psyr_0570 - DNA mismatch repair protein MutL, at 647,607 to 649,553
_0570
Psyr_0571: Psyr_0571 - tRNA isopentenyltransferase, at 649,554 to 650,525
_0571
Psyr_0572: Psyr_0572 - RNA-binding protein Hfq, at 650,619 to 650,879
_0572
Psyr_0573: Psyr_0573 - GTP-binding protein HflX, at 650,892 to 652,193
_0573
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 648.566 kb on - strand, within Psyr_0570 at 648.566 kb on - strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.628 kb on + strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.629 kb on - strand, within Psyr_0570 at 648.643 kb on - strand, within Psyr_0570 at 648.852 kb on + strand, within Psyr_0570 at 648.852 kb on + strand, within Psyr_0570 at 648.852 kb on + strand, within Psyr_0570 at 648.853 kb on - strand, within Psyr_0570 at 648.853 kb on - strand, within Psyr_0570 at 648.968 kb on + strand, within Psyr_0570 at 648.984 kb on + strand, within Psyr_0570 at 648.984 kb on + strand, within Psyr_0570 at 648.985 kb on - strand, within Psyr_0570 at 649.007 kb on + strand, within Psyr_0570 at 649.007 kb on + strand, within Psyr_0570 at 649.007 kb on + strand, within Psyr_0570 at 649.008 kb on - strand, within Psyr_0570 at 649.008 kb on - strand, within Psyr_0570 at 649.008 kb on - strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.011 kb on + strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.012 kb on - strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.080 kb on + strand, within Psyr_0570 at 649.096 kb on + strand, within Psyr_0570 at 649.096 kb on + strand, within Psyr_0570 at 649.496 kb on + strand at 649.564 kb on + strand at 649.838 kb on + strand, within Psyr_0571 at 649.838 kb on + strand, within Psyr_0571 at 649.839 kb on - strand, within Psyr_0571 at 649.839 kb on - strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.862 kb on + strand, within Psyr_0571 at 649.869 kb on + strand, within Psyr_0571 at 649.870 kb on - strand, within Psyr_0571 at 649.870 kb on - strand, within Psyr_0571 at 650.015 kb on + strand, within Psyr_0571 at 650.015 kb on + strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.016 kb on - strand, within Psyr_0571 at 650.154 kb on + strand, within Psyr_0571 at 650.155 kb on - strand, within Psyr_0571 at 650.157 kb on - strand, within Psyr_0571 at 650.157 kb on - strand, within Psyr_0571 at 650.157 kb on - strand, within Psyr_0571 at 650.515 kb on + strand at 650.515 kb on + strand at 650.544 kb on + strand at 650.593 kb on + strand at 650.603 kb on + strand at 650.871 kb on - strand at 650.880 kb on + strand at 651.060 kb on + strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.061 kb on - strand, within Psyr_0573 at 651.242 kb on + strand, within Psyr_0573
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nonanoic 10 mM remove 648,566 - Psyr_0570 0.49 -1.0 648,566 - Psyr_0570 0.49 -0.7 648,628 + Psyr_0570 0.52 -0.5 648,628 + Psyr_0570 0.52 +0.4 648,628 + Psyr_0570 0.52 -0.5 648,628 + Psyr_0570 0.52 -0.5 648,628 + Psyr_0570 0.52 +1.3 648,628 + Psyr_0570 0.52 +0.1 648,628 + Psyr_0570 0.52 -0.1 648,628 + Psyr_0570 0.52 -0.5 648,628 + Psyr_0570 0.52 +1.0 648,629 - Psyr_0570 0.52 -1.6 648,629 - Psyr_0570 0.52 -0.3 648,629 - Psyr_0570 0.52 +0.4 648,629 - Psyr_0570 0.52 -0.8 648,629 - Psyr_0570 0.52 -0.7 648,629 - Psyr_0570 0.52 -1.0 648,629 - Psyr_0570 0.52 -0.7 648,629 - Psyr_0570 0.52 -1.6 648,629 - Psyr_0570 0.52 +1.9 648,629 - Psyr_0570 0.52 +1.8 648,629 - Psyr_0570 0.52 +0.3 648,629 - Psyr_0570 0.52 -1.5 648,643 - Psyr_0570 0.53 +0.3 648,852 + Psyr_0570 0.64 +0.5 648,852 + Psyr_0570 0.64 +1.3 648,852 + Psyr_0570 0.64 -0.2 648,853 - Psyr_0570 0.64 +0.5 648,853 - Psyr_0570 0.64 -2.3 648,968 + Psyr_0570 0.70 -0.5 648,984 + Psyr_0570 0.71 -1.2 648,984 + Psyr_0570 0.71 +1.3 648,985 - Psyr_0570 0.71 -0.7 649,007 + Psyr_0570 0.72 +0.5 649,007 + Psyr_0570 0.72 +0.8 649,007 + Psyr_0570 0.72 -1.0 649,008 - Psyr_0570 0.72 -0.3 649,008 - Psyr_0570 0.72 +1.8 649,008 - Psyr_0570 0.72 -1.7 649,011 + Psyr_0570 0.72 -0.5 649,011 + Psyr_0570 0.72 +0.3 649,011 + Psyr_0570 0.72 +0.9 649,011 + Psyr_0570 0.72 +0.2 649,011 + Psyr_0570 0.72 -2.2 649,011 + Psyr_0570 0.72 -0.8 649,011 + Psyr_0570 0.72 -0.9 649,011 + Psyr_0570 0.72 -0.0 649,012 - Psyr_0570 0.72 -0.6 649,012 - Psyr_0570 0.72 +1.1 649,012 - Psyr_0570 0.72 -0.8 649,012 - Psyr_0570 0.72 -0.9 649,080 + Psyr_0570 0.76 -2.4 649,080 + Psyr_0570 0.76 +4.4 649,080 + Psyr_0570 0.76 +0.4 649,096 + Psyr_0570 0.76 -1.1 649,096 + Psyr_0570 0.76 -1.4 649,496 + +0.3 649,564 + +0.3 649,838 + Psyr_0571 0.29 -1.0 649,838 + Psyr_0571 0.29 -3.1 649,839 - Psyr_0571 0.29 +1.3 649,839 - Psyr_0571 0.29 +0.3 649,862 + Psyr_0571 0.32 -1.3 649,862 + Psyr_0571 0.32 -1.1 649,862 + Psyr_0571 0.32 -2.5 649,862 + Psyr_0571 0.32 +2.0 649,869 + Psyr_0571 0.32 -1.6 649,870 - Psyr_0571 0.33 -1.9 649,870 - Psyr_0571 0.33 +0.3 650,015 + Psyr_0571 0.47 -2.0 650,015 + Psyr_0571 0.47 -1.1 650,016 - Psyr_0571 0.48 -0.2 650,016 - Psyr_0571 0.48 +0.1 650,016 - Psyr_0571 0.48 +0.5 650,154 + Psyr_0571 0.62 -1.9 650,155 - Psyr_0571 0.62 +1.7 650,157 - Psyr_0571 0.62 +3.3 650,157 - Psyr_0571 0.62 -0.8 650,157 - Psyr_0571 0.62 -0.3 650,515 + +0.1 650,515 + +0.1 650,544 + +1.3 650,593 + -0.3 650,603 + -1.3 650,871 - +1.1 650,880 + -0.6 651,060 + Psyr_0573 0.13 -0.4 651,061 - Psyr_0573 0.13 +0.3 651,061 - Psyr_0573 0.13 -1.5 651,061 - Psyr_0573 0.13 -0.3 651,242 + Psyr_0573 0.27 -2.4
Or see this region's nucleotide sequence