Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04435 and PS417_04440 are separated by 164 nucleotides PS417_04440 and PS417_04445 are separated by 3 nucleotides PS417_04445 and PS417_04450 are separated by 35 nucleotides PS417_04450 and PS417_04455 are separated by 191 nucleotides
PS417_04435: PS417_04435 - uracil phosphoribosyltransferase, at 985,798 to 986,436
_04435
PS417_04440: PS417_04440 - hypoxanthine-guanine phosphoribosyltransferase, at 986,601 to 987,158
_04440
PS417_04445: PS417_04445 - cupin, at 987,162 to 987,629
_04445
PS417_04450: PS417_04450 - hypothetical protein, at 987,665 to 988,150
_04450
PS417_04455: PS417_04455 - aminopeptidase, at 988,342 to 988,629
_04455
Position (kb) 987
988 Strain fitness (log2 ratio) -2
-1
0
1
2 at 986.176 kb on + strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.177 kb on - strand, within PS417_04435 at 986.233 kb on - strand, within PS417_04435 at 986.283 kb on - strand, within PS417_04435 at 986.315 kb on + strand, within PS417_04435 at 986.316 kb on - strand, within PS417_04435 at 986.316 kb on - strand, within PS417_04435 at 986.367 kb on + strand, within PS417_04435 at 986.368 kb on - strand, within PS417_04435 at 986.385 kb on + strand at 986.386 kb on - strand at 986.477 kb on + strand at 986.478 kb on - strand at 986.500 kb on + strand at 986.500 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.502 kb on + strand at 986.503 kb on - strand at 986.510 kb on + strand at 986.510 kb on + strand at 986.511 kb on - strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.513 kb on + strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.514 kb on - strand at 986.555 kb on + strand at 986.555 kb on + strand at 986.655 kb on + strand at 986.814 kb on + strand, within PS417_04440 at 987.055 kb on - strand, within PS417_04440 at 987.055 kb on - strand, within PS417_04440 at 987.105 kb on + strand at 987.114 kb on + strand at 987.138 kb on + strand at 987.156 kb on + strand at 987.156 kb on + strand at 987.156 kb on + strand at 987.157 kb on - strand at 987.157 kb on - strand at 987.303 kb on + strand, within PS417_04445 at 987.303 kb on + strand, within PS417_04445 at 987.303 kb on + strand, within PS417_04445 at 987.303 kb on + strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.304 kb on - strand, within PS417_04445 at 987.597 kb on + strand at 987.632 kb on + strand at 987.679 kb on - strand at 987.818 kb on - strand, within PS417_04450 at 987.818 kb on - strand, within PS417_04450 at 987.818 kb on - strand, within PS417_04450 at 987.989 kb on + strand, within PS417_04450 at 987.990 kb on - strand, within PS417_04450 at 987.998 kb on - strand, within PS417_04450 at 988.038 kb on - strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.077 kb on - strand, within PS417_04450 at 988.077 kb on - strand, within PS417_04450 at 988.081 kb on - strand, within PS417_04450 at 988.095 kb on - strand, within PS417_04450 at 988.108 kb on + strand at 988.108 kb on + strand at 988.109 kb on - strand at 988.109 kb on - strand at 988.122 kb on + strand at 988.122 kb on + strand at 988.166 kb on - strand at 988.166 kb on - strand at 988.203 kb on + strand at 988.211 kb on - strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.299 kb on + strand at 988.318 kb on - strand at 988.318 kb on - strand at 988.585 kb on - strand, within PS417_04455
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 986,176 + PS417_04435 0.59 -0.3 986,177 - PS417_04435 0.59 -0.9 986,177 - PS417_04435 0.59 +1.4 986,177 - PS417_04435 0.59 -1.3 986,233 - PS417_04435 0.68 +0.5 986,283 - PS417_04435 0.76 +1.7 986,315 + PS417_04435 0.81 -0.3 986,316 - PS417_04435 0.81 -0.5 986,316 - PS417_04435 0.81 -1.5 986,367 + PS417_04435 0.89 -0.6 986,368 - PS417_04435 0.89 -1.3 986,385 + -0.2 986,386 - -0.3 986,477 + -0.3 986,478 - +0.1 986,500 + -1.6 986,500 + -1.1 986,502 + -1.0 986,502 + +0.4 986,502 + +0.5 986,502 + +0.7 986,502 + -0.1 986,502 + -0.2 986,503 - -2.5 986,510 + -0.3 986,510 + +0.2 986,511 - -1.3 986,513 + +0.5 986,513 + +0.1 986,513 + +0.0 986,513 + +1.0 986,514 - +0.5 986,514 - -0.0 986,514 - +1.1 986,514 - -1.6 986,555 + +0.1 986,555 + -0.1 986,655 + -0.1 986,814 + PS417_04440 0.38 +0.7 987,055 - PS417_04440 0.81 -0.6 987,055 - PS417_04440 0.81 +0.1 987,105 + +0.0 987,114 + +0.1 987,138 + -0.7 987,156 + +1.0 987,156 + +1.1 987,156 + +0.4 987,157 - +1.1 987,157 - -0.3 987,303 + PS417_04445 0.30 -2.3 987,303 + PS417_04445 0.30 +0.7 987,303 + PS417_04445 0.30 -0.8 987,303 + PS417_04445 0.30 -0.4 987,304 - PS417_04445 0.30 -0.7 987,304 - PS417_04445 0.30 -0.4 987,304 - PS417_04445 0.30 -1.5 987,304 - PS417_04445 0.30 +0.8 987,597 + +0.1 987,632 + -0.6 987,679 - +0.9 987,818 - PS417_04450 0.31 +0.5 987,818 - PS417_04450 0.31 -1.1 987,818 - PS417_04450 0.31 +0.3 987,989 + PS417_04450 0.67 +0.6 987,990 - PS417_04450 0.67 -1.1 987,998 - PS417_04450 0.69 -1.0 988,038 - PS417_04450 0.77 +0.4 988,076 + PS417_04450 0.85 -0.4 988,076 + PS417_04450 0.85 +0.2 988,076 + PS417_04450 0.85 -0.0 988,076 + PS417_04450 0.85 +0.7 988,077 - PS417_04450 0.85 +0.5 988,077 - PS417_04450 0.85 -0.2 988,081 - PS417_04450 0.86 +0.5 988,095 - PS417_04450 0.88 +0.2 988,108 + -0.9 988,108 + -0.0 988,109 - -0.9 988,109 - +0.4 988,122 + -0.4 988,122 + +2.3 988,166 - +0.4 988,166 - +0.5 988,203 + +0.3 988,211 - -0.3 988,216 + -0.2 988,216 + +0.2 988,299 + -0.6 988,318 - -0.6 988,318 - -0.2 988,585 - PS417_04455 0.84 -0.8
Or see this region's nucleotide sequence