Strain Fitness in Pseudomonas simiae WCS417 around PS417_28425

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28415 and PS417_28420 are separated by 22 nucleotidesPS417_28420 and PS417_28425 are separated by 150 nucleotidesPS417_28425 and PS417_28430 are separated by 77 nucleotides PS417_28415: PS417_28415 - phosphatidate cytidylyltransferase, at 6,133,509 to 6,134,441 _28415 PS417_28420: PS417_28420 - AsnC family transcriptional regulator, at 6,134,464 to 6,134,937 _28420 PS417_28425: PS417_28425 - lysine transporter LysE, at 6,135,088 to 6,135,717 _28425 PS417_28430: PS417_28430 - alpha-2-macroglobulin, at 6,135,795 to 6,141,599 _28430 Position (kb) 6135 6136Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6134.092 kb on + strand, within PS417_28415at 6134.092 kb on + strand, within PS417_28415at 6134.092 kb on + strand, within PS417_28415at 6134.093 kb on - strand, within PS417_28415at 6134.100 kb on + strand, within PS417_28415at 6134.100 kb on + strand, within PS417_28415at 6134.101 kb on - strand, within PS417_28415at 6134.101 kb on - strand, within PS417_28415at 6134.226 kb on - strand, within PS417_28415at 6134.345 kb on + strand, within PS417_28415at 6134.346 kb on - strand, within PS417_28415at 6134.448 kb on + strandat 6135.085 kb on + strandat 6135.085 kb on + strandat 6135.130 kb on + strandat 6135.342 kb on + strand, within PS417_28425at 6135.363 kb on + strand, within PS417_28425at 6135.363 kb on + strand, within PS417_28425at 6135.364 kb on - strand, within PS417_28425at 6135.586 kb on + strand, within PS417_28425at 6135.646 kb on - strand, within PS417_28425at 6135.761 kb on + strandat 6135.762 kb on - strandat 6135.762 kb on - strandat 6135.762 kb on - strandat 6135.762 kb on - strandat 6135.766 kb on + strandat 6135.967 kb on + strandat 6136.002 kb on + strandat 6136.002 kb on + strandat 6136.017 kb on + strandat 6136.050 kb on + strandat 6136.081 kb on - strandat 6136.272 kb on + strandat 6136.272 kb on + strandat 6136.272 kb on + strandat 6136.273 kb on - strandat 6136.319 kb on - strandat 6136.329 kb on + strandat 6136.329 kb on + strandat 6136.466 kb on - strand, within PS417_28430at 6136.466 kb on - strand, within PS417_28430at 6136.570 kb on - strand, within PS417_28430at 6136.573 kb on + strand, within PS417_28430at 6136.573 kb on + strand, within PS417_28430at 6136.638 kb on - strand, within PS417_28430at 6136.638 kb on - strand, within PS417_28430

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
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6,134,092 + PS417_28415 0.62 +0.1
6,134,092 + PS417_28415 0.62 +0.2
6,134,092 + PS417_28415 0.62 +0.0
6,134,093 - PS417_28415 0.63 +0.6
6,134,100 + PS417_28415 0.63 -0.5
6,134,100 + PS417_28415 0.63 -0.9
6,134,101 - PS417_28415 0.63 +0.2
6,134,101 - PS417_28415 0.63 -0.6
6,134,226 - PS417_28415 0.77 -0.3
6,134,345 + PS417_28415 0.90 +0.1
6,134,346 - PS417_28415 0.90 +0.4
6,134,448 + -0.1
6,135,085 + +0.2
6,135,085 + +0.3
6,135,130 + -0.0
6,135,342 + PS417_28425 0.40 -0.6
6,135,363 + PS417_28425 0.44 +0.9
6,135,363 + PS417_28425 0.44 +1.1
6,135,364 - PS417_28425 0.44 +0.5
6,135,586 + PS417_28425 0.79 +0.6
6,135,646 - PS417_28425 0.89 -0.2
6,135,761 + -0.2
6,135,762 - +0.1
6,135,762 - +1.5
6,135,762 - +0.9
6,135,762 - -1.2
6,135,766 + +3.3
6,135,967 + +0.4
6,136,002 + -1.8
6,136,002 + -0.2
6,136,017 + -1.6
6,136,050 + +0.4
6,136,081 - -0.7
6,136,272 + -0.0
6,136,272 + +0.1
6,136,272 + +0.1
6,136,273 - -1.4
6,136,319 - -0.2
6,136,329 + -0.4
6,136,329 + +0.3
6,136,466 - PS417_28430 0.12 -0.1
6,136,466 - PS417_28430 0.12 +1.7
6,136,570 - PS417_28430 0.13 +0.4
6,136,573 + PS417_28430 0.13 +0.3
6,136,573 + PS417_28430 0.13 -0.5
6,136,638 - PS417_28430 0.15 +0.5
6,136,638 - PS417_28430 0.15 +2.7

Or see this region's nucleotide sequence