Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26120 and PS417_26125 are separated by 34 nucleotides PS417_26125 and PS417_26130 are separated by 94 nucleotides PS417_26130 and PS417_26135 are separated by 51 nucleotides
PS417_26120: PS417_26120 - hypothetical protein, at 5,645,318 to 5,645,935
_26120
PS417_26125: PS417_26125 - glutathione S-transferase, at 5,645,970 to 5,646,599
_26125
PS417_26130: PS417_26130 - membrane protein, at 5,646,694 to 5,648,067
_26130
PS417_26135: PS417_26135 - histidine kinase, at 5,648,119 to 5,649,558
_26135
Position (kb) 5646
5647
5648
5649 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5645.811 kb on + strand, within PS417_26120 at 5645.812 kb on - strand, within PS417_26120 at 5645.898 kb on - strand at 5645.903 kb on + strand at 5645.904 kb on - strand at 5646.024 kb on - strand at 5646.202 kb on - strand, within PS417_26125 at 5646.484 kb on - strand, within PS417_26125 at 5646.608 kb on - strand at 5646.755 kb on + strand at 5646.768 kb on + strand at 5646.768 kb on + strand at 5646.768 kb on + strand at 5646.857 kb on + strand, within PS417_26130 at 5646.869 kb on + strand, within PS417_26130 at 5646.869 kb on + strand, within PS417_26130 at 5646.869 kb on + strand, within PS417_26130 at 5646.870 kb on - strand, within PS417_26130 at 5646.870 kb on - strand, within PS417_26130 at 5646.935 kb on + strand, within PS417_26130 at 5646.935 kb on + strand, within PS417_26130 at 5646.936 kb on - strand, within PS417_26130 at 5646.936 kb on - strand, within PS417_26130 at 5646.936 kb on - strand, within PS417_26130 at 5646.977 kb on + strand, within PS417_26130 at 5646.994 kb on + strand at 5646.994 kb on + strand, within PS417_26130 at 5646.994 kb on + strand, within PS417_26130 at 5646.994 kb on + strand, within PS417_26130 at 5646.994 kb on + strand at 5646.994 kb on + strand, within PS417_26130 at 5646.995 kb on - strand, within PS417_26130 at 5646.995 kb on - strand, within PS417_26130 at 5647.026 kb on - strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.143 kb on - strand, within PS417_26130 at 5647.169 kb on + strand, within PS417_26130 at 5647.319 kb on - strand, within PS417_26130 at 5647.384 kb on + strand, within PS417_26130 at 5647.731 kb on - strand, within PS417_26130 at 5647.797 kb on - strand, within PS417_26130 at 5647.919 kb on + strand, within PS417_26130 at 5647.919 kb on + strand, within PS417_26130 at 5648.347 kb on + strand, within PS417_26135 at 5648.347 kb on + strand, within PS417_26135 at 5648.347 kb on + strand, within PS417_26135 at 5648.348 kb on - strand, within PS417_26135 at 5648.468 kb on + strand, within PS417_26135 at 5648.469 kb on - strand, within PS417_26135 at 5648.545 kb on + strand, within PS417_26135 at 5648.707 kb on - strand, within PS417_26135 at 5648.779 kb on + strand, within PS417_26135 at 5648.780 kb on - strand, within PS417_26135 at 5648.780 kb on - strand, within PS417_26135 at 5648.780 kb on - strand, within PS417_26135 at 5648.783 kb on + strand, within PS417_26135 at 5648.784 kb on - strand, within PS417_26135 at 5648.784 kb on - strand, within PS417_26135 at 5648.796 kb on - strand, within PS417_26135 at 5649.032 kb on + strand, within PS417_26135 at 5649.033 kb on - strand, within PS417_26135
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 5,645,811 + PS417_26120 0.80 +0.2 5,645,812 - PS417_26120 0.80 +0.7 5,645,898 - +0.7 5,645,903 + -0.3 5,645,904 - +0.2 5,646,024 - -1.8 5,646,202 - PS417_26125 0.37 -0.2 5,646,484 - PS417_26125 0.82 -0.3 5,646,608 - -0.2 5,646,755 + -0.5 5,646,768 + +0.4 5,646,768 + +0.2 5,646,768 + -0.1 5,646,857 + PS417_26130 0.12 +1.0 5,646,869 + PS417_26130 0.13 +0.6 5,646,869 + PS417_26130 0.13 +0.9 5,646,869 + PS417_26130 0.13 -0.3 5,646,870 - PS417_26130 0.13 +0.9 5,646,870 - PS417_26130 0.13 +0.2 5,646,935 + PS417_26130 0.18 +0.8 5,646,935 + PS417_26130 0.18 -0.6 5,646,936 - PS417_26130 0.18 +0.4 5,646,936 - PS417_26130 0.18 +0.3 5,646,936 - PS417_26130 0.18 -0.6 5,646,977 + PS417_26130 0.21 -0.6 5,646,994 + +2.3 5,646,994 + PS417_26130 0.22 -0.1 5,646,994 + PS417_26130 0.22 +1.0 5,646,994 + PS417_26130 0.22 +0.7 5,646,994 + +2.7 5,646,994 + PS417_26130 0.22 +0.4 5,646,995 - PS417_26130 0.22 -0.4 5,646,995 - PS417_26130 0.22 +0.3 5,647,026 - PS417_26130 0.24 +2.7 5,647,142 + PS417_26130 0.33 -0.1 5,647,142 + PS417_26130 0.33 -1.3 5,647,142 + PS417_26130 0.33 -0.0 5,647,142 + PS417_26130 0.33 -1.3 5,647,143 - PS417_26130 0.33 -0.3 5,647,169 + PS417_26130 0.35 +1.1 5,647,319 - PS417_26130 0.45 -0.1 5,647,384 + PS417_26130 0.50 -2.7 5,647,731 - PS417_26130 0.75 -0.5 5,647,797 - PS417_26130 0.80 +0.8 5,647,919 + PS417_26130 0.89 +1.4 5,647,919 + PS417_26130 0.89 -0.1 5,648,347 + PS417_26135 0.16 +0.9 5,648,347 + PS417_26135 0.16 -0.2 5,648,347 + PS417_26135 0.16 +3.6 5,648,348 - PS417_26135 0.16 +0.3 5,648,468 + PS417_26135 0.24 +0.1 5,648,469 - PS417_26135 0.24 +1.2 5,648,545 + PS417_26135 0.30 -0.1 5,648,707 - PS417_26135 0.41 +1.3 5,648,779 + PS417_26135 0.46 -0.4 5,648,780 - PS417_26135 0.46 +1.5 5,648,780 - PS417_26135 0.46 +0.4 5,648,780 - PS417_26135 0.46 -0.1 5,648,783 + PS417_26135 0.46 -0.2 5,648,784 - PS417_26135 0.46 +0.9 5,648,784 - PS417_26135 0.46 +0.1 5,648,796 - PS417_26135 0.47 -0.9 5,649,032 + PS417_26135 0.63 -0.3 5,649,033 - PS417_26135 0.63 -0.4
Or see this region's nucleotide sequence