Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13200 and PS417_13205 overlap by 4 nucleotides PS417_13205 and PS417_13210 overlap by 4 nucleotides PS417_13210 and PS417_13215 overlap by 4 nucleotides
PS417_13200: PS417_13200 - isochorismate synthase, at 2,886,996 to 2,888,363
_13200
PS417_13205: PS417_13205 - isochorismate-pyruvate lyase, at 2,888,360 to 2,888,668
_13205
PS417_13210: PS417_13210 - enantio-pyochelin biosynthetic protein PchC, at 2,888,665 to 2,889,423
_13210
PS417_13215: PS417_13215 - Triostin synthetase I, at 2,889,420 to 2,891,018
_13215
Position (kb) 2888
2889 Strain fitness (log2 ratio) -1
0
1 at 2887.877 kb on - strand, within PS417_13200 at 2888.412 kb on + strand, within PS417_13205 at 2888.569 kb on - strand, within PS417_13205 at 2888.569 kb on - strand, within PS417_13205 at 2889.645 kb on + strand, within PS417_13215 at 2889.645 kb on + strand, within PS417_13215 at 2889.645 kb on + strand, within PS417_13215
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 2,887,877 - PS417_13200 0.64 -0.4 2,888,412 + PS417_13205 0.17 +1.1 2,888,569 - PS417_13205 0.68 +0.9 2,888,569 - PS417_13205 0.68 +0.8 2,889,645 + PS417_13215 0.14 +0.2 2,889,645 + PS417_13215 0.14 -0.1 2,889,645 + PS417_13215 0.14 -0.5
Or see this region's nucleotide sequence