Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24515 and PS417_24520 are separated by 224 nucleotides PS417_24520 and PS417_24525 are separated by 25 nucleotides PS417_24525 and PS417_24530 are separated by 117 nucleotides
PS417_24515: PS417_24515 - acyl carrier protein, at 5,320,551 to 5,320,727
_24515
PS417_24520: PS417_24520 - DNA polymerase III subunit epsilon, at 5,320,952 to 5,321,563
_24520
PS417_24525: PS417_24525 - nuclease, at 5,321,589 to 5,322,065
_24525
PS417_24530: PS417_24530 - ABC transporter substrate-binding protein, at 5,322,183 to 5,322,914
_24530
Position (kb) 5321
5322
5323 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5320.765 kb on - strand at 5320.821 kb on + strand at 5320.822 kb on - strand at 5320.825 kb on + strand at 5320.826 kb on - strand at 5320.826 kb on - strand at 5320.869 kb on + strand at 5320.869 kb on + strand at 5320.870 kb on - strand at 5320.871 kb on + strand at 5320.871 kb on + strand at 5320.871 kb on + strand at 5320.872 kb on - strand at 5320.872 kb on - strand at 5321.151 kb on + strand, within PS417_24520 at 5321.151 kb on + strand, within PS417_24520 at 5321.265 kb on + strand, within PS417_24520 at 5321.265 kb on + strand, within PS417_24520 at 5321.265 kb on + strand, within PS417_24520 at 5321.266 kb on - strand, within PS417_24520 at 5321.554 kb on + strand at 5321.554 kb on + strand at 5321.554 kb on + strand at 5321.555 kb on - strand at 5321.555 kb on - strand at 5321.555 kb on - strand at 5321.555 kb on - strand at 5321.590 kb on + strand at 5321.595 kb on - strand at 5321.674 kb on + strand, within PS417_24525 at 5321.845 kb on + strand, within PS417_24525 at 5321.846 kb on - strand, within PS417_24525 at 5321.929 kb on + strand, within PS417_24525 at 5321.936 kb on - strand, within PS417_24525 at 5322.022 kb on + strand at 5322.022 kb on + strand at 5322.023 kb on - strand at 5322.026 kb on - strand at 5322.496 kb on + strand, within PS417_24530 at 5322.497 kb on - strand, within PS417_24530 at 5322.497 kb on - strand, within PS417_24530 at 5322.717 kb on - strand, within PS417_24530 at 5322.775 kb on + strand, within PS417_24530 at 5322.775 kb on + strand, within PS417_24530 at 5322.775 kb on + strand, within PS417_24530 at 5322.776 kb on - strand, within PS417_24530 at 5322.776 kb on - strand, within PS417_24530 at 5322.776 kb on - strand, within PS417_24530 at 5322.974 kb on + strand at 5322.974 kb on + strand at 5322.975 kb on - strand at 5322.975 kb on - strand at 5323.022 kb on + strand at 5323.023 kb on - strand at 5323.023 kb on - strand at 5323.032 kb on + strand at 5323.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 5,320,765 - +1.1 5,320,821 + +0.8 5,320,822 - -2.0 5,320,825 + -0.1 5,320,826 - -0.2 5,320,826 - +0.4 5,320,869 + +0.4 5,320,869 + -0.7 5,320,870 - +0.4 5,320,871 + -0.0 5,320,871 + +0.6 5,320,871 + -0.6 5,320,872 - +0.7 5,320,872 - -0.2 5,321,151 + PS417_24520 0.33 +0.6 5,321,151 + PS417_24520 0.33 -0.0 5,321,265 + PS417_24520 0.51 +0.0 5,321,265 + PS417_24520 0.51 -2.4 5,321,265 + PS417_24520 0.51 -0.4 5,321,266 - PS417_24520 0.51 +0.0 5,321,554 + +0.3 5,321,554 + +1.3 5,321,554 + +0.4 5,321,555 - -1.0 5,321,555 - -0.8 5,321,555 - -0.1 5,321,555 - +0.2 5,321,590 + +0.0 5,321,595 - -0.5 5,321,674 + PS417_24525 0.18 -1.4 5,321,845 + PS417_24525 0.54 +0.9 5,321,846 - PS417_24525 0.54 -0.1 5,321,929 + PS417_24525 0.71 +2.9 5,321,936 - PS417_24525 0.73 -1.1 5,322,022 + -0.5 5,322,022 + -0.2 5,322,023 - -0.2 5,322,026 - +0.8 5,322,496 + PS417_24530 0.43 +0.0 5,322,497 - PS417_24530 0.43 -0.7 5,322,497 - PS417_24530 0.43 +1.2 5,322,717 - PS417_24530 0.73 -0.6 5,322,775 + PS417_24530 0.81 +0.1 5,322,775 + PS417_24530 0.81 +0.1 5,322,775 + PS417_24530 0.81 -0.4 5,322,776 - PS417_24530 0.81 -0.4 5,322,776 - PS417_24530 0.81 -0.8 5,322,776 - PS417_24530 0.81 -0.3 5,322,974 + +0.5 5,322,974 + -1.3 5,322,975 - -0.0 5,322,975 - -0.9 5,323,022 + -0.3 5,323,023 - -0.2 5,323,023 - -0.2 5,323,032 + +0.1 5,323,033 - +0.5
Or see this region's nucleotide sequence