Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23100 and PS417_23105 are separated by 103 nucleotides PS417_23105 and PS417_23110 overlap by 8 nucleotides PS417_23110 and PS417_23115 are separated by 176 nucleotides PS417_23115 and PS417_23120 overlap by 13 nucleotides
PS417_23100: PS417_23100 - peptidase M23, at 5,007,620 to 5,008,441
_23100
PS417_23105: PS417_23105 - hypothetical protein, at 5,008,545 to 5,008,772
_23105
PS417_23110: PS417_23110 - 2-isopropylmalate synthase, at 5,008,765 to 5,010,444
_23110
PS417_23115: PS417_23115 - carbon-nitrogen hydrolase, at 5,010,621 to 5,011,412
_23115
PS417_23120: PS417_23120 - aminotransferase, at 5,011,400 to 5,012,548
_23120
Position (kb) 5008
5009
5010
5011 Strain fitness (log2 ratio) -1
0
1
2 at 5007.863 kb on - strand, within PS417_23100 at 5007.863 kb on - strand, within PS417_23100 at 5007.903 kb on - strand, within PS417_23100 at 5008.013 kb on + strand, within PS417_23100 at 5008.211 kb on + strand, within PS417_23100 at 5008.211 kb on + strand, within PS417_23100 at 5008.212 kb on - strand, within PS417_23100 at 5008.212 kb on - strand, within PS417_23100 at 5008.369 kb on + strand at 5008.695 kb on + strand, within PS417_23105 at 5008.746 kb on + strand, within PS417_23105 at 5008.795 kb on + strand at 5009.106 kb on + strand, within PS417_23110 at 5009.106 kb on + strand, within PS417_23110 at 5009.152 kb on + strand, within PS417_23110 at 5009.152 kb on + strand, within PS417_23110 at 5009.434 kb on + strand, within PS417_23110 at 5009.434 kb on + strand, within PS417_23110 at 5009.434 kb on + strand, within PS417_23110 at 5009.435 kb on - strand, within PS417_23110 at 5009.435 kb on - strand, within PS417_23110 at 5009.435 kb on - strand, within PS417_23110 at 5009.466 kb on + strand, within PS417_23110 at 5009.466 kb on + strand, within PS417_23110 at 5009.641 kb on + strand at 5009.641 kb on + strand, within PS417_23110 at 5009.641 kb on + strand, within PS417_23110 at 5009.642 kb on - strand, within PS417_23110 at 5009.642 kb on - strand, within PS417_23110 at 5009.642 kb on - strand, within PS417_23110 at 5009.642 kb on - strand, within PS417_23110 at 5010.050 kb on - strand, within PS417_23110 at 5010.070 kb on + strand, within PS417_23110 at 5010.084 kb on + strand, within PS417_23110 at 5010.259 kb on + strand, within PS417_23110 at 5010.259 kb on + strand, within PS417_23110 at 5010.259 kb on + strand, within PS417_23110 at 5010.308 kb on - strand at 5010.458 kb on + strand at 5010.502 kb on - strand at 5010.561 kb on + strand at 5010.638 kb on + strand at 5010.829 kb on + strand, within PS417_23115 at 5010.829 kb on + strand, within PS417_23115 at 5010.965 kb on - strand, within PS417_23115 at 5011.174 kb on + strand, within PS417_23115 at 5011.175 kb on - strand, within PS417_23115 at 5011.216 kb on + strand, within PS417_23115 at 5011.412 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x remove 5,007,863 - PS417_23100 0.30 +0.1 5,007,863 - PS417_23100 0.30 +0.7 5,007,903 - PS417_23100 0.34 +0.4 5,008,013 + PS417_23100 0.48 -1.5 5,008,211 + PS417_23100 0.72 -0.1 5,008,211 + PS417_23100 0.72 +0.8 5,008,212 - PS417_23100 0.72 -0.1 5,008,212 - PS417_23100 0.72 +1.1 5,008,369 + +0.1 5,008,695 + PS417_23105 0.66 -0.1 5,008,746 + PS417_23105 0.88 +2.2 5,008,795 + -0.7 5,009,106 + PS417_23110 0.20 -0.8 5,009,106 + PS417_23110 0.20 -0.9 5,009,152 + PS417_23110 0.23 +0.3 5,009,152 + PS417_23110 0.23 -1.2 5,009,434 + PS417_23110 0.40 -1.6 5,009,434 + PS417_23110 0.40 -1.2 5,009,434 + PS417_23110 0.40 -0.9 5,009,435 - PS417_23110 0.40 -0.1 5,009,435 - PS417_23110 0.40 -0.8 5,009,435 - PS417_23110 0.40 -0.5 5,009,466 + PS417_23110 0.42 -1.0 5,009,466 + PS417_23110 0.42 -0.5 5,009,641 + -1.7 5,009,641 + PS417_23110 0.52 -0.9 5,009,641 + PS417_23110 0.52 -1.0 5,009,642 - PS417_23110 0.52 +1.2 5,009,642 - PS417_23110 0.52 -0.8 5,009,642 - PS417_23110 0.52 -1.5 5,009,642 - PS417_23110 0.52 -0.7 5,010,050 - PS417_23110 0.76 -0.9 5,010,070 + PS417_23110 0.78 -1.6 5,010,084 + PS417_23110 0.79 -0.4 5,010,259 + PS417_23110 0.89 +0.6 5,010,259 + PS417_23110 0.89 +0.3 5,010,259 + PS417_23110 0.89 -0.4 5,010,308 - -0.2 5,010,458 + +1.0 5,010,502 - +0.4 5,010,561 + -1.0 5,010,638 + +0.1 5,010,829 + PS417_23115 0.26 -0.0 5,010,829 + PS417_23115 0.26 -0.4 5,010,965 - PS417_23115 0.43 +1.1 5,011,174 + PS417_23115 0.70 -0.1 5,011,175 - PS417_23115 0.70 -0.3 5,011,216 + PS417_23115 0.75 -0.3 5,011,412 + +0.9
Or see this region's nucleotide sequence