Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04980 and PS417_04985 are separated by 104 nucleotides PS417_04985 and PS417_04990 are separated by 36 nucleotides PS417_04990 and PS417_04995 are separated by 75 nucleotides PS417_04995 and PS417_05000 are separated by 159 nucleotides
PS417_04980: PS417_04980 - response regulator receiver protein, at 1,108,001 to 1,108,636
_04980
PS417_04985: PS417_04985 - ketosteroid isomerase, at 1,108,741 to 1,109,211
_04985
PS417_04990: PS417_04990 - GIY-YIG nuclease, at 1,109,248 to 1,109,523
_04990
PS417_04995: PS417_04995 - glutathione S-transferase, at 1,109,599 to 1,110,534
_04995
PS417_05000: PS417_05000 - TonB-dependent receptor, at 1,110,694 to 1,113,069
_05000
Position (kb) 1109
1110
1111 Strain fitness (log2 ratio) -2
-1
0
1 at 1108.701 kb on + strand at 1108.822 kb on + strand, within PS417_04985 at 1108.822 kb on + strand, within PS417_04985 at 1108.822 kb on + strand, within PS417_04985 at 1108.823 kb on - strand, within PS417_04985 at 1108.887 kb on + strand, within PS417_04985 at 1108.887 kb on + strand, within PS417_04985 at 1108.988 kb on - strand, within PS417_04985 at 1108.988 kb on - strand, within PS417_04985 at 1109.219 kb on - strand at 1109.314 kb on + strand, within PS417_04990 at 1109.314 kb on + strand, within PS417_04990 at 1109.413 kb on + strand, within PS417_04990 at 1109.413 kb on + strand, within PS417_04990 at 1109.697 kb on + strand, within PS417_04995 at 1109.697 kb on + strand, within PS417_04995 at 1109.698 kb on - strand, within PS417_04995 at 1109.698 kb on - strand, within PS417_04995 at 1109.698 kb on - strand, within PS417_04995 at 1109.698 kb on - strand, within PS417_04995 at 1109.781 kb on + strand, within PS417_04995 at 1109.782 kb on - strand, within PS417_04995 at 1109.785 kb on + strand, within PS417_04995 at 1109.785 kb on + strand, within PS417_04995 at 1109.785 kb on + strand, within PS417_04995 at 1109.785 kb on + strand, within PS417_04995 at 1109.785 kb on + strand, within PS417_04995 at 1109.786 kb on - strand, within PS417_04995 at 1109.786 kb on - strand, within PS417_04995 at 1110.271 kb on - strand, within PS417_04995 at 1110.551 kb on + strand at 1110.552 kb on - strand at 1110.552 kb on - strand at 1110.583 kb on + strand at 1110.669 kb on + strand at 1110.841 kb on + strand at 1110.842 kb on - strand at 1111.061 kb on - strand, within PS417_05000 at 1111.375 kb on + strand, within PS417_05000 at 1111.464 kb on + strand, within PS417_05000
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 1,108,701 + +1.0 1,108,822 + PS417_04985 0.17 +0.3 1,108,822 + PS417_04985 0.17 -1.3 1,108,822 + PS417_04985 0.17 +1.3 1,108,823 - PS417_04985 0.17 +0.6 1,108,887 + PS417_04985 0.31 -0.3 1,108,887 + PS417_04985 0.31 -0.3 1,108,988 - PS417_04985 0.52 +0.5 1,108,988 - PS417_04985 0.52 +0.2 1,109,219 - +0.2 1,109,314 + PS417_04990 0.24 +0.2 1,109,314 + PS417_04990 0.24 -0.4 1,109,413 + PS417_04990 0.60 -0.5 1,109,413 + PS417_04990 0.60 +1.3 1,109,697 + PS417_04995 0.10 -1.4 1,109,697 + PS417_04995 0.10 +0.2 1,109,698 - PS417_04995 0.11 -2.4 1,109,698 - PS417_04995 0.11 +1.5 1,109,698 - PS417_04995 0.11 +1.5 1,109,698 - PS417_04995 0.11 -0.8 1,109,781 + PS417_04995 0.19 -1.3 1,109,782 - PS417_04995 0.20 +0.4 1,109,785 + PS417_04995 0.20 +0.7 1,109,785 + PS417_04995 0.20 +0.9 1,109,785 + PS417_04995 0.20 +1.7 1,109,785 + PS417_04995 0.20 +1.6 1,109,785 + PS417_04995 0.20 +0.1 1,109,786 - PS417_04995 0.20 -0.1 1,109,786 - PS417_04995 0.20 +0.4 1,110,271 - PS417_04995 0.72 +0.9 1,110,551 + +0.7 1,110,552 - -0.0 1,110,552 - +0.2 1,110,583 + +0.3 1,110,669 + +0.7 1,110,841 + +0.3 1,110,842 - +0.2 1,111,061 - PS417_05000 0.15 +0.6 1,111,375 + PS417_05000 0.29 -0.7 1,111,464 + PS417_05000 0.32 +0.2
Or see this region's nucleotide sequence