Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04940 and PS417_04945 are separated by 124 nucleotides PS417_04945 and PS417_04950 are separated by 79 nucleotides PS417_04950 and PS417_04955 are separated by 52 nucleotides
PS417_04940: PS417_04940 - outer membrane usher protein, at 1,099,857 to 1,102,298
_04940
PS417_04945: PS417_04945 - fimbrial chaperone protein, at 1,102,423 to 1,103,145
_04945
PS417_04950: PS417_04950 - hypothetical protein, at 1,103,225 to 1,103,851
_04950
PS417_04955: PS417_04955 - hypothetical protein, at 1,103,904 to 1,104,527
_04955
Position (kb)
1102
1103
1104 Strain fitness (log2 ratio)
-2
-1
0
1 at 1101.755 kb on - strand, within PS417_04940 at 1101.755 kb on - strand, within PS417_04940 at 1101.772 kb on + strand, within PS417_04940 at 1102.323 kb on + strand at 1102.467 kb on - strand at 1102.553 kb on + strand, within PS417_04945 at 1102.554 kb on - strand, within PS417_04945 at 1102.618 kb on + strand, within PS417_04945 at 1102.622 kb on + strand, within PS417_04945 at 1102.623 kb on - strand, within PS417_04945 at 1102.741 kb on + strand, within PS417_04945 at 1103.162 kb on - strand at 1103.162 kb on - strand at 1103.397 kb on + strand, within PS417_04950 at 1103.398 kb on - strand, within PS417_04950 at 1103.545 kb on - strand, within PS417_04950 at 1103.545 kb on - strand at 1103.550 kb on + strand, within PS417_04950 at 1103.551 kb on - strand, within PS417_04950 at 1103.551 kb on - strand, within PS417_04950 at 1103.551 kb on - strand, within PS417_04950 at 1103.551 kb on - strand, within PS417_04950 at 1103.551 kb on - strand, within PS417_04950 at 1103.627 kb on - strand at 1103.661 kb on + strand, within PS417_04950 at 1103.661 kb on + strand, within PS417_04950 at 1103.661 kb on + strand, within PS417_04950 at 1103.662 kb on - strand, within PS417_04950 at 1103.662 kb on - strand, within PS417_04950 at 1103.729 kb on + strand, within PS417_04950 at 1103.839 kb on + strand at 1103.861 kb on + strand at 1103.911 kb on + strand at 1103.912 kb on - strand at 1104.086 kb on + strand, within PS417_04955 at 1104.086 kb on + strand, within PS417_04955 at 1104.086 kb on + strand, within PS417_04955 at 1104.087 kb on - strand, within PS417_04955 at 1104.087 kb on - strand, within PS417_04955 at 1104.137 kb on + strand, within PS417_04955 at 1104.137 kb on + strand, within PS417_04955 at 1104.137 kb on + strand, within PS417_04955 at 1104.138 kb on - strand, within PS417_04955 at 1104.138 kb on - strand, within PS417_04955
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 1,101,755 - PS417_04940 0.78 -0.4 1,101,755 - PS417_04940 0.78 +0.1 1,101,772 + PS417_04940 0.78 -0.9 1,102,323 + -0.8 1,102,467 - +0.6 1,102,553 + PS417_04945 0.18 +0.4 1,102,554 - PS417_04945 0.18 -0.1 1,102,618 + PS417_04945 0.27 -0.0 1,102,622 + PS417_04945 0.28 +1.1 1,102,623 - PS417_04945 0.28 +0.2 1,102,741 + PS417_04945 0.44 +0.3 1,103,162 - +1.5 1,103,162 - -0.2 1,103,397 + PS417_04950 0.27 +0.8 1,103,398 - PS417_04950 0.28 +0.1 1,103,545 - PS417_04950 0.51 +0.9 1,103,545 - -2.4 1,103,550 + PS417_04950 0.52 +0.4 1,103,551 - PS417_04950 0.52 -0.9 1,103,551 - PS417_04950 0.52 +0.6 1,103,551 - PS417_04950 0.52 +0.3 1,103,551 - PS417_04950 0.52 -0.7 1,103,551 - PS417_04950 0.52 +0.3 1,103,627 - -0.2 1,103,661 + PS417_04950 0.70 -0.6 1,103,661 + PS417_04950 0.70 -0.3 1,103,661 + PS417_04950 0.70 +0.1 1,103,662 - PS417_04950 0.70 +0.4 1,103,662 - PS417_04950 0.70 +0.1 1,103,729 + PS417_04950 0.80 -0.2 1,103,839 + +0.4 1,103,861 + -0.0 1,103,911 + -1.5 1,103,912 - +0.1 1,104,086 + PS417_04955 0.29 +0.1 1,104,086 + PS417_04955 0.29 -0.3 1,104,086 + PS417_04955 0.29 +0.5 1,104,087 - PS417_04955 0.29 +0.5 1,104,087 - PS417_04955 0.29 -0.4 1,104,137 + PS417_04955 0.37 -0.4 1,104,137 + PS417_04955 0.37 -0.2 1,104,137 + PS417_04955 0.37 -0.4 1,104,138 - PS417_04955 0.38 +0.3 1,104,138 - PS417_04955 0.38 -1.0
Or see this region's nucleotide sequence