Strain Fitness in Pseudomonas simiae WCS417 around PS417_03525

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03520 and PS417_03525 are separated by 14 nucleotidesPS417_03525 and PS417_03530 are separated by 1 nucleotidesPS417_03530 and PS417_03535 are separated by 74 nucleotidesPS417_03535 and PS417_03540 are separated by 2 nucleotides PS417_03520: PS417_03520 - secretin, at 804,661 to 806,802 _03520 PS417_03525: PS417_03525 - hypothetical protein, at 806,817 to 807,209 _03525 PS417_03530: PS417_03530 - hypothetical protein, at 807,211 to 807,429 _03530 PS417_03535: PS417_03535 - type III secretion protein, at 807,504 to 808,115 _03535 PS417_03540: PS417_03540 - type III secretion protein, at 808,118 to 808,675 _03540 Position (kb) 806 807 808Strain fitness (log2 ratio) -1 0 1at 805.880 kb on + strand, within PS417_03520at 805.880 kb on + strand, within PS417_03520at 805.881 kb on - strand, within PS417_03520at 805.903 kb on + strand, within PS417_03520at 805.903 kb on + strand, within PS417_03520at 806.279 kb on + strand, within PS417_03520at 806.279 kb on + strand, within PS417_03520at 806.605 kb on + strandat 806.796 kb on + strandat 806.802 kb on + strandat 806.802 kb on + strandat 806.802 kb on + strandat 806.802 kb on + strandat 806.802 kb on + strandat 806.802 kb on + strandat 806.803 kb on - strandat 806.803 kb on - strandat 806.803 kb on - strandat 806.818 kb on + strandat 807.132 kb on + strand, within PS417_03525at 807.162 kb on + strand, within PS417_03525at 807.187 kb on + strandat 807.273 kb on - strand, within PS417_03530at 807.278 kb on + strand, within PS417_03530at 807.359 kb on + strand, within PS417_03530at 807.360 kb on - strand, within PS417_03530at 807.378 kb on + strand, within PS417_03530at 807.378 kb on + strand, within PS417_03530at 807.436 kb on - strandat 807.436 kb on - strandat 807.480 kb on - strandat 807.491 kb on + strandat 807.527 kb on + strandat 807.527 kb on + strandat 807.616 kb on - strandat 807.734 kb on + strand, within PS417_03535at 807.735 kb on - strand, within PS417_03535at 807.779 kb on + strand, within PS417_03535at 807.779 kb on + strand, within PS417_03535at 807.780 kb on - strand, within PS417_03535at 807.782 kb on + strand, within PS417_03535at 807.810 kb on + strand, within PS417_03535at 807.811 kb on - strand, within PS417_03535at 807.822 kb on - strand, within PS417_03535at 807.921 kb on + strand, within PS417_03535at 807.975 kb on + strand, within PS417_03535at 807.975 kb on + strandat 807.975 kb on + strand, within PS417_03535at 807.976 kb on - strand, within PS417_03535at 807.978 kb on + strand, within PS417_03535at 807.979 kb on - strand, within PS417_03535at 808.031 kb on - strand, within PS417_03535at 808.119 kb on + strandat 808.174 kb on + strand, within PS417_03540

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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805,880 + PS417_03520 0.57 -0.3
805,880 + PS417_03520 0.57 +0.4
805,881 - PS417_03520 0.57 -0.4
805,903 + PS417_03520 0.58 -1.0
805,903 + PS417_03520 0.58 -0.1
806,279 + PS417_03520 0.76 -0.7
806,279 + PS417_03520 0.76 +0.5
806,605 + -0.0
806,796 + -0.2
806,802 + -0.3
806,802 + -0.4
806,802 + +0.4
806,802 + +0.4
806,802 + +0.3
806,802 + +0.9
806,803 - +0.2
806,803 - -0.3
806,803 - -0.2
806,818 + -0.5
807,132 + PS417_03525 0.80 +0.3
807,162 + PS417_03525 0.88 +0.4
807,187 + -0.6
807,273 - PS417_03530 0.28 -1.2
807,278 + PS417_03530 0.31 +0.4
807,359 + PS417_03530 0.68 +0.4
807,360 - PS417_03530 0.68 +0.2
807,378 + PS417_03530 0.76 -0.3
807,378 + PS417_03530 0.76 +0.0
807,436 - +0.1
807,436 - -0.9
807,480 - -0.2
807,491 + -0.2
807,527 + -0.2
807,527 + -0.9
807,616 - +0.7
807,734 + PS417_03535 0.38 -1.2
807,735 - PS417_03535 0.38 -0.3
807,779 + PS417_03535 0.45 -1.3
807,779 + PS417_03535 0.45 -0.1
807,780 - PS417_03535 0.45 +0.7
807,782 + PS417_03535 0.45 -0.9
807,810 + PS417_03535 0.50 +0.3
807,811 - PS417_03535 0.50 -0.9
807,822 - PS417_03535 0.52 -0.3
807,921 + PS417_03535 0.68 -1.7
807,975 + PS417_03535 0.77 -1.0
807,975 + -0.9
807,975 + PS417_03535 0.77 +1.2
807,976 - PS417_03535 0.77 +0.5
807,978 + PS417_03535 0.77 +0.4
807,979 - PS417_03535 0.78 +0.1
808,031 - PS417_03535 0.86 -1.0
808,119 + +1.0
808,174 + PS417_03540 0.10 +0.1

Or see this region's nucleotide sequence