Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03185 and PS417_03190 are separated by 144 nucleotides PS417_03190 and PS417_03195 are separated by 118 nucleotides
PS417_03185: PS417_03185 - NADPH:quinone reductase, at 729,319 to 730,332
_03185
PS417_03190: PS417_03190 - antibiotic biosynthesis monooxygenase, at 730,477 to 730,770
_03190
PS417_03195: PS417_03195 - LysR family transcriptional regulator, at 730,889 to 731,815
_03195
Position (kb) 730
731 Strain fitness (log2 ratio) -2
-1
0
1
2 at 729.522 kb on - strand, within PS417_03185 at 729.522 kb on - strand at 729.996 kb on + strand, within PS417_03185 at 729.997 kb on - strand, within PS417_03185 at 729.997 kb on - strand, within PS417_03185 at 730.024 kb on - strand, within PS417_03185 at 730.068 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.148 kb on - strand, within PS417_03185 at 730.313 kb on + strand at 730.313 kb on + strand at 730.314 kb on - strand at 730.314 kb on - strand at 730.314 kb on - strand at 730.314 kb on - strand at 730.317 kb on - strand at 730.534 kb on - strand, within PS417_03190 at 730.610 kb on + strand, within PS417_03190 at 730.649 kb on + strand, within PS417_03190 at 730.650 kb on - strand, within PS417_03190 at 730.770 kb on + strand at 730.804 kb on + strand at 730.804 kb on + strand at 730.805 kb on - strand at 730.805 kb on - strand at 730.817 kb on - strand at 730.832 kb on - strand at 730.920 kb on + strand at 730.921 kb on - strand at 730.921 kb on - strand at 730.921 kb on - strand at 731.024 kb on - strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.465 kb on + strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.466 kb on - strand, within PS417_03195 at 731.467 kb on + strand, within PS417_03195 at 731.468 kb on - strand, within PS417_03195 at 731.468 kb on - strand, within PS417_03195 at 731.468 kb on - strand, within PS417_03195 at 731.606 kb on + strand, within PS417_03195 at 731.607 kb on - strand, within PS417_03195
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 729,522 - PS417_03185 0.20 -0.0 729,522 - +0.7 729,996 + PS417_03185 0.67 +0.1 729,997 - PS417_03185 0.67 +0.9 729,997 - PS417_03185 0.67 -1.0 730,024 - PS417_03185 0.70 +0.4 730,068 - PS417_03185 0.74 -0.4 730,148 - PS417_03185 0.82 -1.1 730,148 - PS417_03185 0.82 +0.1 730,148 - PS417_03185 0.82 -0.1 730,313 + -0.2 730,313 + +0.2 730,314 - -1.3 730,314 - -0.1 730,314 - -2.3 730,314 - -0.6 730,317 - +1.4 730,534 - PS417_03190 0.19 -0.0 730,610 + PS417_03190 0.45 +0.9 730,649 + PS417_03190 0.59 +1.6 730,650 - PS417_03190 0.59 -0.9 730,770 + -0.2 730,804 + -0.2 730,804 + +2.5 730,805 - -0.1 730,805 - -0.3 730,817 - -0.2 730,832 - -0.2 730,920 + +0.5 730,921 - +0.6 730,921 - +0.1 730,921 - -0.6 731,024 - PS417_03195 0.15 +0.1 731,465 + PS417_03195 0.62 -0.4 731,465 + PS417_03195 0.62 -1.9 731,465 + PS417_03195 0.62 -0.7 731,465 + PS417_03195 0.62 +0.0 731,465 + PS417_03195 0.62 +0.0 731,465 + PS417_03195 0.62 -0.4 731,465 + PS417_03195 0.62 -2.4 731,466 - PS417_03195 0.62 -0.2 731,466 - PS417_03195 0.62 -0.6 731,466 - PS417_03195 0.62 -0.1 731,466 - PS417_03195 0.62 -0.0 731,467 + PS417_03195 0.62 -0.1 731,468 - PS417_03195 0.62 -0.1 731,468 - PS417_03195 0.62 +0.4 731,468 - PS417_03195 0.62 -0.1 731,606 + PS417_03195 0.77 +0.2 731,607 - PS417_03195 0.77 +0.5
Or see this region's nucleotide sequence