Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27080 and PS417_27085 overlap by 15 nucleotides PS417_27085 and PS417_27090 are separated by 100 nucleotides PS417_27090 and PS417_27095 overlap by 23 nucleotides
PS417_27080: PS417_27080 - penicillin amidase, at 5,845,356 to 5,847,710
_27080
PS417_27085: PS417_27085 - AraC family transcriptional regulator, at 5,847,696 to 5,848,604
_27085
PS417_27090: PS417_27090 - hypothetical protein, at 5,848,705 to 5,849,058
_27090
PS417_27095: PS417_27095 - AraC family transcriptional regulator, at 5,849,036 to 5,850,001
_27095
Position (kb)
5847
5848
5849 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5846.717 kb on + strand, within PS417_27080 at 5846.717 kb on + strand, within PS417_27080 at 5846.718 kb on - strand, within PS417_27080 at 5846.806 kb on - strand, within PS417_27080 at 5846.865 kb on + strand, within PS417_27080 at 5846.865 kb on + strand, within PS417_27080 at 5846.865 kb on + strand, within PS417_27080 at 5846.865 kb on + strand, within PS417_27080 at 5846.865 kb on + strand, within PS417_27080 at 5846.865 kb on + strand, within PS417_27080 at 5846.866 kb on - strand, within PS417_27080 at 5846.866 kb on - strand, within PS417_27080 at 5846.866 kb on - strand, within PS417_27080 at 5846.932 kb on + strand, within PS417_27080 at 5846.932 kb on + strand, within PS417_27080 at 5846.932 kb on + strand, within PS417_27080 at 5846.932 kb on + strand, within PS417_27080 at 5846.932 kb on + strand, within PS417_27080 at 5846.933 kb on - strand, within PS417_27080 at 5846.933 kb on - strand, within PS417_27080 at 5847.041 kb on + strand, within PS417_27080 at 5847.042 kb on - strand, within PS417_27080 at 5847.042 kb on - strand, within PS417_27080 at 5847.042 kb on - strand, within PS417_27080 at 5847.304 kb on + strand, within PS417_27080 at 5847.304 kb on + strand, within PS417_27080 at 5847.305 kb on - strand, within PS417_27080 at 5847.498 kb on + strand at 5847.498 kb on + strand at 5847.498 kb on + strand at 5847.539 kb on - strand at 5847.618 kb on + strand at 5847.618 kb on + strand at 5847.618 kb on + strand at 5847.736 kb on + strand at 5847.736 kb on + strand at 5847.736 kb on + strand at 5847.736 kb on + strand at 5848.214 kb on - strand, within PS417_27085 at 5848.253 kb on - strand, within PS417_27085 at 5848.483 kb on + strand, within PS417_27085 at 5848.714 kb on - strand at 5848.714 kb on - strand at 5848.714 kb on - strand at 5848.792 kb on + strand, within PS417_27090 at 5848.792 kb on + strand, within PS417_27090 at 5848.792 kb on + strand, within PS417_27090 at 5848.793 kb on - strand, within PS417_27090 at 5848.996 kb on + strand, within PS417_27090 at 5848.996 kb on + strand, within PS417_27090 at 5848.996 kb on + strand, within PS417_27090 at 5848.996 kb on + strand, within PS417_27090 at 5848.996 kb on + strand, within PS417_27090 at 5848.997 kb on - strand, within PS417_27090 at 5848.997 kb on - strand, within PS417_27090 at 5848.997 kb on - strand, within PS417_27090 at 5848.997 kb on - strand, within PS417_27090 at 5848.997 kb on - strand, within PS417_27090 at 5848.997 kb on - strand, within PS417_27090 at 5848.997 kb on - strand, within PS417_27090 at 5848.997 kb on - strand, within PS417_27090 at 5848.997 kb on - strand, within PS417_27090 at 5848.998 kb on + strand, within PS417_27090 at 5848.998 kb on + strand, within PS417_27090 at 5848.998 kb on + strand, within PS417_27090 at 5848.998 kb on + strand, within PS417_27090 at 5848.998 kb on + strand, within PS417_27090 at 5848.999 kb on - strand, within PS417_27090 at 5848.999 kb on - strand, within PS417_27090 at 5848.999 kb on - strand, within PS417_27090 at 5848.999 kb on - strand, within PS417_27090 at 5848.999 kb on - strand, within PS417_27090 at 5848.999 kb on - strand, within PS417_27090 at 5848.999 kb on - strand, within PS417_27090 at 5849.003 kb on - strand, within PS417_27090 at 5849.276 kb on - strand, within PS417_27095 at 5849.276 kb on - strand, within PS417_27095 at 5849.276 kb on - strand, within PS417_27095 at 5849.334 kb on + strand, within PS417_27095 at 5849.335 kb on - strand, within PS417_27095 at 5849.335 kb on - strand, within PS417_27095 at 5849.487 kb on + strand, within PS417_27095 at 5849.487 kb on + strand, within PS417_27095 at 5849.551 kb on - strand, within PS417_27095
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 5,846,717 + PS417_27080 0.58 +0.7 5,846,717 + PS417_27080 0.58 -0.1 5,846,718 - PS417_27080 0.58 -0.7 5,846,806 - PS417_27080 0.62 -0.6 5,846,865 + PS417_27080 0.64 +0.3 5,846,865 + PS417_27080 0.64 -0.5 5,846,865 + PS417_27080 0.64 +0.3 5,846,865 + PS417_27080 0.64 -0.1 5,846,865 + PS417_27080 0.64 +1.8 5,846,865 + PS417_27080 0.64 +0.8 5,846,866 - PS417_27080 0.64 -0.8 5,846,866 - PS417_27080 0.64 -0.1 5,846,866 - PS417_27080 0.64 -0.0 5,846,932 + PS417_27080 0.67 +0.8 5,846,932 + PS417_27080 0.67 +1.2 5,846,932 + PS417_27080 0.67 +0.3 5,846,932 + PS417_27080 0.67 -0.1 5,846,932 + PS417_27080 0.67 -0.2 5,846,933 - PS417_27080 0.67 -1.7 5,846,933 - PS417_27080 0.67 +2.6 5,847,041 + PS417_27080 0.72 -0.4 5,847,042 - PS417_27080 0.72 +0.6 5,847,042 - PS417_27080 0.72 +1.3 5,847,042 - PS417_27080 0.72 +1.8 5,847,304 + PS417_27080 0.83 +0.7 5,847,304 + PS417_27080 0.83 -0.4 5,847,305 - PS417_27080 0.83 -0.5 5,847,498 + +0.1 5,847,498 + +0.2 5,847,498 + +0.2 5,847,539 - -0.2 5,847,618 + -1.0 5,847,618 + -1.7 5,847,618 + -0.3 5,847,736 + -0.5 5,847,736 + +0.5 5,847,736 + -0.8 5,847,736 + +0.5 5,848,214 - PS417_27085 0.57 +1.4 5,848,253 - PS417_27085 0.61 +0.5 5,848,483 + PS417_27085 0.87 -0.4 5,848,714 - +0.5 5,848,714 - -0.0 5,848,714 - -1.1 5,848,792 + PS417_27090 0.25 +0.0 5,848,792 + PS417_27090 0.25 +0.1 5,848,792 + PS417_27090 0.25 +0.0 5,848,793 - PS417_27090 0.25 -0.6 5,848,996 + PS417_27090 0.82 +0.0 5,848,996 + PS417_27090 0.82 -0.4 5,848,996 + PS417_27090 0.82 +0.2 5,848,996 + PS417_27090 0.82 -0.7 5,848,996 + PS417_27090 0.82 -1.4 5,848,997 - PS417_27090 0.82 +0.1 5,848,997 - PS417_27090 0.82 -0.2 5,848,997 - PS417_27090 0.82 -0.4 5,848,997 - PS417_27090 0.82 -2.0 5,848,997 - PS417_27090 0.82 -0.0 5,848,997 - PS417_27090 0.82 +0.1 5,848,997 - PS417_27090 0.82 -0.1 5,848,997 - PS417_27090 0.82 -0.3 5,848,997 - PS417_27090 0.82 -0.0 5,848,998 + PS417_27090 0.83 +0.4 5,848,998 + PS417_27090 0.83 +0.5 5,848,998 + PS417_27090 0.83 +1.8 5,848,998 + PS417_27090 0.83 +0.3 5,848,998 + PS417_27090 0.83 -1.4 5,848,999 - PS417_27090 0.83 +0.4 5,848,999 - PS417_27090 0.83 -0.4 5,848,999 - PS417_27090 0.83 +0.0 5,848,999 - PS417_27090 0.83 -0.5 5,848,999 - PS417_27090 0.83 +1.3 5,848,999 - PS417_27090 0.83 -0.5 5,848,999 - PS417_27090 0.83 -0.3 5,849,003 - PS417_27090 0.84 -0.6 5,849,276 - PS417_27095 0.25 -0.0 5,849,276 - PS417_27095 0.25 -0.0 5,849,276 - PS417_27095 0.25 -0.7 5,849,334 + PS417_27095 0.31 +0.8 5,849,335 - PS417_27095 0.31 -0.3 5,849,335 - PS417_27095 0.31 +0.3 5,849,487 + PS417_27095 0.47 +0.1 5,849,487 + PS417_27095 0.47 +0.0 5,849,551 - PS417_27095 0.53 -0.5
Or see this region's nucleotide sequence