Strain Fitness in Pseudomonas simiae WCS417 around PS417_27085

Experiment: RCH2_defined_glucose with MS_media 1x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_27080 and PS417_27085 overlap by 15 nucleotidesPS417_27085 and PS417_27090 are separated by 100 nucleotidesPS417_27090 and PS417_27095 overlap by 23 nucleotides PS417_27080: PS417_27080 - penicillin amidase, at 5,845,356 to 5,847,710 _27080 PS417_27085: PS417_27085 - AraC family transcriptional regulator, at 5,847,696 to 5,848,604 _27085 PS417_27090: PS417_27090 - hypothetical protein, at 5,848,705 to 5,849,058 _27090 PS417_27095: PS417_27095 - AraC family transcriptional regulator, at 5,849,036 to 5,850,001 _27095 Position (kb) 5847 5848 5849Strain fitness (log2 ratio) -2 -1 0 1 2at 5846.717 kb on + strand, within PS417_27080at 5846.717 kb on + strand, within PS417_27080at 5846.718 kb on - strand, within PS417_27080at 5846.806 kb on - strand, within PS417_27080at 5846.865 kb on + strand, within PS417_27080at 5846.865 kb on + strand, within PS417_27080at 5846.865 kb on + strand, within PS417_27080at 5846.865 kb on + strand, within PS417_27080at 5846.865 kb on + strand, within PS417_27080at 5846.865 kb on + strand, within PS417_27080at 5846.866 kb on - strand, within PS417_27080at 5846.866 kb on - strand, within PS417_27080at 5846.866 kb on - strand, within PS417_27080at 5846.932 kb on + strand, within PS417_27080at 5846.932 kb on + strand, within PS417_27080at 5846.932 kb on + strand, within PS417_27080at 5846.932 kb on + strand, within PS417_27080at 5846.932 kb on + strand, within PS417_27080at 5846.933 kb on - strand, within PS417_27080at 5846.933 kb on - strand, within PS417_27080at 5847.041 kb on + strand, within PS417_27080at 5847.042 kb on - strand, within PS417_27080at 5847.042 kb on - strand, within PS417_27080at 5847.042 kb on - strand, within PS417_27080at 5847.304 kb on + strand, within PS417_27080at 5847.304 kb on + strand, within PS417_27080at 5847.305 kb on - strand, within PS417_27080at 5847.498 kb on + strandat 5847.498 kb on + strandat 5847.498 kb on + strandat 5847.539 kb on - strandat 5847.618 kb on + strandat 5847.618 kb on + strandat 5847.618 kb on + strandat 5847.736 kb on + strandat 5847.736 kb on + strandat 5847.736 kb on + strandat 5847.736 kb on + strandat 5848.214 kb on - strand, within PS417_27085at 5848.253 kb on - strand, within PS417_27085at 5848.483 kb on + strand, within PS417_27085at 5848.714 kb on - strandat 5848.714 kb on - strandat 5848.714 kb on - strandat 5848.792 kb on + strand, within PS417_27090at 5848.792 kb on + strand, within PS417_27090at 5848.792 kb on + strand, within PS417_27090at 5848.793 kb on - strand, within PS417_27090at 5848.996 kb on + strand, within PS417_27090at 5848.996 kb on + strand, within PS417_27090at 5848.996 kb on + strand, within PS417_27090at 5848.996 kb on + strand, within PS417_27090at 5848.996 kb on + strand, within PS417_27090at 5848.997 kb on - strand, within PS417_27090at 5848.997 kb on - strand, within PS417_27090at 5848.997 kb on - strand, within PS417_27090at 5848.997 kb on - strand, within PS417_27090at 5848.997 kb on - strand, within PS417_27090at 5848.997 kb on - strand, within PS417_27090at 5848.997 kb on - strand, within PS417_27090at 5848.997 kb on - strand, within PS417_27090at 5848.997 kb on - strand, within PS417_27090at 5848.998 kb on + strand, within PS417_27090at 5848.998 kb on + strand, within PS417_27090at 5848.998 kb on + strand, within PS417_27090at 5848.998 kb on + strand, within PS417_27090at 5848.998 kb on + strand, within PS417_27090at 5848.999 kb on - strand, within PS417_27090at 5848.999 kb on - strand, within PS417_27090at 5848.999 kb on - strand, within PS417_27090at 5848.999 kb on - strand, within PS417_27090at 5848.999 kb on - strand, within PS417_27090at 5848.999 kb on - strand, within PS417_27090at 5848.999 kb on - strand, within PS417_27090at 5849.003 kb on - strand, within PS417_27090at 5849.276 kb on - strand, within PS417_27095at 5849.276 kb on - strand, within PS417_27095at 5849.276 kb on - strand, within PS417_27095at 5849.334 kb on + strand, within PS417_27095at 5849.335 kb on - strand, within PS417_27095at 5849.335 kb on - strand, within PS417_27095at 5849.487 kb on + strand, within PS417_27095at 5849.487 kb on + strand, within PS417_27095at 5849.551 kb on - strand, within PS417_27095

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
remove
5,846,717 + PS417_27080 0.58 +0.7
5,846,717 + PS417_27080 0.58 -0.1
5,846,718 - PS417_27080 0.58 -0.7
5,846,806 - PS417_27080 0.62 -0.6
5,846,865 + PS417_27080 0.64 +0.3
5,846,865 + PS417_27080 0.64 -0.5
5,846,865 + PS417_27080 0.64 +0.3
5,846,865 + PS417_27080 0.64 -0.1
5,846,865 + PS417_27080 0.64 +1.8
5,846,865 + PS417_27080 0.64 +0.8
5,846,866 - PS417_27080 0.64 -0.8
5,846,866 - PS417_27080 0.64 -0.1
5,846,866 - PS417_27080 0.64 -0.0
5,846,932 + PS417_27080 0.67 +0.8
5,846,932 + PS417_27080 0.67 +1.2
5,846,932 + PS417_27080 0.67 +0.3
5,846,932 + PS417_27080 0.67 -0.1
5,846,932 + PS417_27080 0.67 -0.2
5,846,933 - PS417_27080 0.67 -1.7
5,846,933 - PS417_27080 0.67 +2.6
5,847,041 + PS417_27080 0.72 -0.4
5,847,042 - PS417_27080 0.72 +0.6
5,847,042 - PS417_27080 0.72 +1.3
5,847,042 - PS417_27080 0.72 +1.8
5,847,304 + PS417_27080 0.83 +0.7
5,847,304 + PS417_27080 0.83 -0.4
5,847,305 - PS417_27080 0.83 -0.5
5,847,498 + +0.1
5,847,498 + +0.2
5,847,498 + +0.2
5,847,539 - -0.2
5,847,618 + -1.0
5,847,618 + -1.7
5,847,618 + -0.3
5,847,736 + -0.5
5,847,736 + +0.5
5,847,736 + -0.8
5,847,736 + +0.5
5,848,214 - PS417_27085 0.57 +1.4
5,848,253 - PS417_27085 0.61 +0.5
5,848,483 + PS417_27085 0.87 -0.4
5,848,714 - +0.5
5,848,714 - -0.0
5,848,714 - -1.1
5,848,792 + PS417_27090 0.25 +0.0
5,848,792 + PS417_27090 0.25 +0.1
5,848,792 + PS417_27090 0.25 +0.0
5,848,793 - PS417_27090 0.25 -0.6
5,848,996 + PS417_27090 0.82 +0.0
5,848,996 + PS417_27090 0.82 -0.4
5,848,996 + PS417_27090 0.82 +0.2
5,848,996 + PS417_27090 0.82 -0.7
5,848,996 + PS417_27090 0.82 -1.4
5,848,997 - PS417_27090 0.82 +0.1
5,848,997 - PS417_27090 0.82 -0.2
5,848,997 - PS417_27090 0.82 -0.4
5,848,997 - PS417_27090 0.82 -2.0
5,848,997 - PS417_27090 0.82 -0.0
5,848,997 - PS417_27090 0.82 +0.1
5,848,997 - PS417_27090 0.82 -0.1
5,848,997 - PS417_27090 0.82 -0.3
5,848,997 - PS417_27090 0.82 -0.0
5,848,998 + PS417_27090 0.83 +0.4
5,848,998 + PS417_27090 0.83 +0.5
5,848,998 + PS417_27090 0.83 +1.8
5,848,998 + PS417_27090 0.83 +0.3
5,848,998 + PS417_27090 0.83 -1.4
5,848,999 - PS417_27090 0.83 +0.4
5,848,999 - PS417_27090 0.83 -0.4
5,848,999 - PS417_27090 0.83 +0.0
5,848,999 - PS417_27090 0.83 -0.5
5,848,999 - PS417_27090 0.83 +1.3
5,848,999 - PS417_27090 0.83 -0.5
5,848,999 - PS417_27090 0.83 -0.3
5,849,003 - PS417_27090 0.84 -0.6
5,849,276 - PS417_27095 0.25 -0.0
5,849,276 - PS417_27095 0.25 -0.0
5,849,276 - PS417_27095 0.25 -0.7
5,849,334 + PS417_27095 0.31 +0.8
5,849,335 - PS417_27095 0.31 -0.3
5,849,335 - PS417_27095 0.31 +0.3
5,849,487 + PS417_27095 0.47 +0.1
5,849,487 + PS417_27095 0.47 +0.0
5,849,551 - PS417_27095 0.53 -0.5

Or see this region's nucleotide sequence