Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24020 and PS417_24025 are separated by 106 nucleotides PS417_24025 and PS417_24030 are separated by 9 nucleotides PS417_24030 and PS417_24035 are separated by 28 nucleotides PS417_24035 and PS417_24040 overlap by 4 nucleotides
PS417_24020: PS417_24020 - 23S rRNA methyltransferase, at 5,200,956 to 5,201,606
_24020
PS417_24025: PS417_24025 - RNA-binding protein, at 5,201,713 to 5,202,021
_24025
PS417_24030: PS417_24030 - MFS transporter, at 5,202,031 to 5,202,435
_24030
PS417_24035: PS417_24035 - transcription elongation factor GreA, at 5,202,464 to 5,202,940
_24035
PS417_24040: PS417_24040 - carbamoyl phosphate synthase large subunit, at 5,202,937 to 5,206,158
_24040
Position (kb) 5202
5203 Strain fitness (log2 ratio) -1
0
1 at 5202.006 kb on - strand at 5202.006 kb on - strand at 5202.117 kb on - strand, within PS417_24030 at 5202.125 kb on - strand, within PS417_24030 at 5202.171 kb on - strand, within PS417_24030 at 5202.186 kb on - strand, within PS417_24030 at 5202.773 kb on - strand, within PS417_24035 at 5202.959 kb on - strand at 5202.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 5,202,006 - -0.8 5,202,006 - -0.5 5,202,117 - PS417_24030 0.21 +1.1 5,202,125 - PS417_24030 0.23 -1.2 5,202,171 - PS417_24030 0.35 +0.4 5,202,186 - PS417_24030 0.38 +1.0 5,202,773 - PS417_24035 0.65 +0.6 5,202,959 - +1.4 5,202,959 - +1.5
Or see this region's nucleotide sequence