Strain Fitness in Pseudomonas simiae WCS417 around PS417_24030

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24020 and PS417_24025 are separated by 106 nucleotidesPS417_24025 and PS417_24030 are separated by 9 nucleotidesPS417_24030 and PS417_24035 are separated by 28 nucleotidesPS417_24035 and PS417_24040 overlap by 4 nucleotides PS417_24020: PS417_24020 - 23S rRNA methyltransferase, at 5,200,956 to 5,201,606 _24020 PS417_24025: PS417_24025 - RNA-binding protein, at 5,201,713 to 5,202,021 _24025 PS417_24030: PS417_24030 - MFS transporter, at 5,202,031 to 5,202,435 _24030 PS417_24035: PS417_24035 - transcription elongation factor GreA, at 5,202,464 to 5,202,940 _24035 PS417_24040: PS417_24040 - carbamoyl phosphate synthase large subunit, at 5,202,937 to 5,206,158 _24040 Position (kb) 5202 5203Strain fitness (log2 ratio) -1 0 1at 5202.006 kb on - strandat 5202.006 kb on - strandat 5202.117 kb on - strand, within PS417_24030at 5202.125 kb on - strand, within PS417_24030at 5202.171 kb on - strand, within PS417_24030at 5202.186 kb on - strand, within PS417_24030at 5202.773 kb on - strand, within PS417_24035at 5202.959 kb on - strandat 5202.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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5,202,006 - -0.8
5,202,006 - -0.5
5,202,117 - PS417_24030 0.21 +1.1
5,202,125 - PS417_24030 0.23 -1.2
5,202,171 - PS417_24030 0.35 +0.4
5,202,186 - PS417_24030 0.38 +1.0
5,202,773 - PS417_24035 0.65 +0.6
5,202,959 - +1.4
5,202,959 - +1.5

Or see this region's nucleotide sequence