Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02155 and PS417_02160 are separated by 278 nucleotides PS417_02160 and PS417_02165 overlap by 4 nucleotides PS417_02165 and PS417_02170 overlap by 4 nucleotides
PS417_02155: PS417_02155 - chemotaxis protein, at 482,596 to 484,221
_02155
PS417_02160: PS417_02160 - hypothetical protein, at 484,500 to 484,730
_02160
PS417_02165: PS417_02165 - ZapA, at 484,727 to 485,020
_02165
PS417_02170: PS417_02170 - acyl-CoA dehydrogenase, at 485,017 to 486,819
_02170
Position (kb) 484
485
486 Strain fitness (log2 ratio) -1
0
1
2 at 483.848 kb on + strand, within PS417_02155 at 483.869 kb on + strand, within PS417_02155 at 483.878 kb on + strand, within PS417_02155 at 484.201 kb on - strand at 484.206 kb on + strand at 484.209 kb on + strand at 484.210 kb on - strand at 484.303 kb on - strand at 484.381 kb on + strand at 484.683 kb on - strand, within PS417_02160 at 484.859 kb on + strand, within PS417_02165 at 484.859 kb on + strand, within PS417_02165 at 484.884 kb on + strand, within PS417_02165 at 484.885 kb on - strand, within PS417_02165 at 485.096 kb on - strand at 485.226 kb on + strand, within PS417_02170 at 485.525 kb on + strand, within PS417_02170 at 485.526 kb on - strand, within PS417_02170 at 485.528 kb on + strand, within PS417_02170 at 485.529 kb on - strand, within PS417_02170 at 485.529 kb on - strand, within PS417_02170 at 485.529 kb on - strand, within PS417_02170 at 485.556 kb on - strand, within PS417_02170 at 485.647 kb on + strand, within PS417_02170 at 485.882 kb on + strand, within PS417_02170 at 485.882 kb on + strand, within PS417_02170 at 485.988 kb on - strand, within PS417_02170
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 483,848 + PS417_02155 0.77 -0.0 483,869 + PS417_02155 0.78 +1.3 483,878 + PS417_02155 0.79 +0.1 484,201 - +0.8 484,206 + +0.0 484,209 + -0.2 484,210 - +0.0 484,303 - +1.1 484,381 + +0.9 484,683 - PS417_02160 0.79 +0.8 484,859 + PS417_02165 0.45 +0.2 484,859 + PS417_02165 0.45 +0.6 484,884 + PS417_02165 0.53 +1.9 484,885 - PS417_02165 0.54 +0.2 485,096 - -0.1 485,226 + PS417_02170 0.12 -0.8 485,525 + PS417_02170 0.28 -0.6 485,526 - PS417_02170 0.28 +0.1 485,528 + PS417_02170 0.28 +2.3 485,529 - PS417_02170 0.28 +0.6 485,529 - PS417_02170 0.28 +0.2 485,529 - PS417_02170 0.28 +0.1 485,556 - PS417_02170 0.30 -0.2 485,647 + PS417_02170 0.35 +0.2 485,882 + PS417_02170 0.48 -1.0 485,882 + PS417_02170 0.48 +0.1 485,988 - PS417_02170 0.54 +0.0
Or see this region's nucleotide sequence