Strain Fitness in Pseudomonas simiae WCS417 around PS417_20140

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20130 and PS417_20135 are separated by 377 nucleotidesPS417_20135 and PS417_20140 are separated by 141 nucleotidesPS417_20140 and PS417_20145 are separated by 25 nucleotidesPS417_20145 and PS417_20150 are separated by 91 nucleotides PS417_20130: PS417_20130 - dehydrogenase, at 4,369,544 to 4,370,257 _20130 PS417_20135: PS417_20135 - hypothetical protein, at 4,370,635 to 4,370,823 _20135 PS417_20140: PS417_20140 - nucleoprotein/polynucleotide-associated enzyme, at 4,370,965 to 4,371,510 _20140 PS417_20145: PS417_20145 - nucleoside triphosphate hydrolase, at 4,371,536 to 4,372,369 _20145 PS417_20150: PS417_20150 - (p)ppGpp synthetase, at 4,372,461 to 4,374,704 _20150 Position (kb) 4370 4371 4372Strain fitness (log2 ratio) -2 -1 0 1 2at 4369.988 kb on + strand, within PS417_20130at 4369.988 kb on + strand, within PS417_20130at 4369.988 kb on + strand, within PS417_20130at 4369.989 kb on - strand, within PS417_20130at 4369.989 kb on - strand, within PS417_20130at 4369.989 kb on - strand, within PS417_20130at 4369.989 kb on - strand, within PS417_20130at 4369.989 kb on - strand, within PS417_20130at 4369.989 kb on - strand, within PS417_20130at 4370.021 kb on + strand, within PS417_20130at 4370.088 kb on + strand, within PS417_20130at 4370.089 kb on - strand, within PS417_20130at 4370.089 kb on - strand, within PS417_20130at 4370.195 kb on - strandat 4370.201 kb on + strandat 4370.202 kb on - strandat 4370.202 kb on - strandat 4370.202 kb on - strandat 4370.202 kb on - strandat 4370.237 kb on - strandat 4370.252 kb on - strandat 4370.252 kb on - strandat 4370.252 kb on - strandat 4370.258 kb on + strandat 4370.259 kb on - strandat 4370.259 kb on - strandat 4370.334 kb on - strandat 4370.334 kb on - strandat 4370.334 kb on - strandat 4370.463 kb on + strandat 4370.562 kb on - strandat 4370.580 kb on - strandat 4370.642 kb on + strandat 4370.642 kb on + strandat 4370.670 kb on + strand, within PS417_20135at 4370.670 kb on + strandat 4370.670 kb on + strand, within PS417_20135at 4370.670 kb on + strand, within PS417_20135at 4370.671 kb on - strand, within PS417_20135at 4370.671 kb on - strand, within PS417_20135at 4370.671 kb on - strand, within PS417_20135at 4370.671 kb on - strandat 4370.671 kb on - strand, within PS417_20135at 4370.714 kb on + strand, within PS417_20135at 4370.715 kb on - strand, within PS417_20135at 4370.715 kb on - strand, within PS417_20135at 4370.766 kb on + strand, within PS417_20135at 4370.770 kb on + strand, within PS417_20135at 4370.938 kb on + strandat 4370.938 kb on + strandat 4370.938 kb on + strandat 4370.938 kb on + strandat 4370.938 kb on + strandat 4370.939 kb on - strandat 4370.966 kb on + strandat 4371.218 kb on + strand, within PS417_20140at 4371.219 kb on - strand, within PS417_20140at 4371.518 kb on - strandat 4371.525 kb on + strandat 4371.525 kb on + strandat 4371.617 kb on + strandat 4371.890 kb on + strand, within PS417_20145at 4371.891 kb on - strand, within PS417_20145at 4372.053 kb on + strand, within PS417_20145at 4372.053 kb on + strand, within PS417_20145at 4372.105 kb on + strand, within PS417_20145at 4372.105 kb on + strand, within PS417_20145at 4372.105 kb on + strand, within PS417_20145at 4372.106 kb on - strand, within PS417_20145at 4372.165 kb on - strand, within PS417_20145at 4372.165 kb on - strandat 4372.167 kb on + strand, within PS417_20145at 4372.167 kb on + strand, within PS417_20145at 4372.168 kb on - strand, within PS417_20145at 4372.284 kb on + strand, within PS417_20145at 4372.284 kb on + strandat 4372.365 kb on + strandat 4372.365 kb on + strandat 4372.365 kb on + strandat 4372.365 kb on + strandat 4372.365 kb on + strandat 4372.366 kb on - strandat 4372.366 kb on - strandat 4372.375 kb on + strandat 4372.375 kb on + strandat 4372.389 kb on + strandat 4372.389 kb on + strandat 4372.389 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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4,369,988 + PS417_20130 0.62 +0.1
4,369,988 + PS417_20130 0.62 +0.8
4,369,988 + PS417_20130 0.62 +0.1
4,369,989 - PS417_20130 0.62 -0.1
4,369,989 - PS417_20130 0.62 +0.2
4,369,989 - PS417_20130 0.62 -0.1
4,369,989 - PS417_20130 0.62 +0.3
4,369,989 - PS417_20130 0.62 -0.5
4,369,989 - PS417_20130 0.62 -0.2
4,370,021 + PS417_20130 0.67 -0.8
4,370,088 + PS417_20130 0.76 -0.2
4,370,089 - PS417_20130 0.76 +0.8
4,370,089 - PS417_20130 0.76 -0.1
4,370,195 - +0.2
4,370,201 + -0.9
4,370,202 - -0.4
4,370,202 - +0.5
4,370,202 - +0.5
4,370,202 - -0.2
4,370,237 - +0.2
4,370,252 - +0.8
4,370,252 - +0.3
4,370,252 - -0.5
4,370,258 + +1.8
4,370,259 - -1.6
4,370,259 - -0.3
4,370,334 - +0.2
4,370,334 - -0.3
4,370,334 - +1.2
4,370,463 + +0.1
4,370,562 - -0.2
4,370,580 - -0.0
4,370,642 + +1.2
4,370,642 + +1.1
4,370,670 + PS417_20135 0.19 -0.9
4,370,670 + -1.8
4,370,670 + PS417_20135 0.19 -1.0
4,370,670 + PS417_20135 0.19 -0.4
4,370,671 - PS417_20135 0.19 -2.1
4,370,671 - PS417_20135 0.19 +2.3
4,370,671 - PS417_20135 0.19 -0.4
4,370,671 - -0.8
4,370,671 - PS417_20135 0.19 +0.6
4,370,714 + PS417_20135 0.42 -0.2
4,370,715 - PS417_20135 0.42 +0.4
4,370,715 - PS417_20135 0.42 -0.2
4,370,766 + PS417_20135 0.69 -0.7
4,370,770 + PS417_20135 0.71 -0.8
4,370,938 + -0.1
4,370,938 + +0.5
4,370,938 + -1.2
4,370,938 + -1.4
4,370,938 + -0.1
4,370,939 - +0.1
4,370,966 + -0.6
4,371,218 + PS417_20140 0.46 +1.1
4,371,219 - PS417_20140 0.47 +0.2
4,371,518 - +0.1
4,371,525 + +0.2
4,371,525 + +1.1
4,371,617 + -1.3
4,371,890 + PS417_20145 0.42 +0.2
4,371,891 - PS417_20145 0.43 +0.5
4,372,053 + PS417_20145 0.62 -0.6
4,372,053 + PS417_20145 0.62 -0.5
4,372,105 + PS417_20145 0.68 -0.7
4,372,105 + PS417_20145 0.68 +1.3
4,372,105 + PS417_20145 0.68 -1.4
4,372,106 - PS417_20145 0.68 -0.8
4,372,165 - PS417_20145 0.75 +0.3
4,372,165 - +0.8
4,372,167 + PS417_20145 0.76 +0.4
4,372,167 + PS417_20145 0.76 +1.1
4,372,168 - PS417_20145 0.76 -0.5
4,372,284 + PS417_20145 0.90 +2.3
4,372,284 + +1.3
4,372,365 + -0.3
4,372,365 + +0.5
4,372,365 + -0.6
4,372,365 + -0.8
4,372,365 + -0.7
4,372,366 - -0.2
4,372,366 - -0.6
4,372,375 + +0.8
4,372,375 + +0.8
4,372,389 + -0.9
4,372,389 + +1.8
4,372,389 + -1.1

Or see this region's nucleotide sequence