Strain Fitness in Pseudomonas simiae WCS417 around PS417_19765

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19755 and PS417_19760 are separated by 9 nucleotidesPS417_19760 and PS417_19765 are separated by 235 nucleotidesPS417_19765 and PS417_19770 are separated by 139 nucleotidesPS417_19770 and PS417_19775 are separated by 30 nucleotides PS417_19755: PS417_19755 - flagellar motor switch protein FliM, at 4,290,226 to 4,291,194 _19755 PS417_19760: PS417_19760 - flagellar basal body protein FliL, at 4,291,204 to 4,291,704 _19760 PS417_19765: PS417_19765 - flagellar hook-length control protein, at 4,291,940 to 4,293,271 _19765 PS417_19770: PS417_19770 - histidine kinase, at 4,293,411 to 4,293,755 _19770 PS417_19775: PS417_19775 - chemotaxis protein CheY, at 4,293,786 to 4,295,504 _19775 Position (kb) 4291 4292 4293 4294Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4291.060 kb on - strand, within PS417_19755at 4291.214 kb on - strandat 4291.582 kb on - strand, within PS417_19760at 4291.582 kb on - strand, within PS417_19760at 4291.587 kb on - strand, within PS417_19760at 4291.587 kb on - strand, within PS417_19760at 4291.587 kb on - strand, within PS417_19760at 4291.587 kb on - strand, within PS417_19760at 4291.636 kb on + strand, within PS417_19760at 4291.648 kb on - strand, within PS417_19760at 4291.659 kb on + strandat 4291.660 kb on - strandat 4291.660 kb on - strandat 4291.660 kb on - strandat 4291.736 kb on - strandat 4291.857 kb on - strandat 4291.884 kb on + strandat 4291.885 kb on - strandat 4291.947 kb on + strandat 4291.948 kb on - strandat 4291.951 kb on - strandat 4291.951 kb on - strandat 4292.201 kb on + strand, within PS417_19765at 4292.202 kb on - strand, within PS417_19765at 4292.334 kb on + strand, within PS417_19765at 4292.334 kb on + strand, within PS417_19765at 4292.334 kb on + strand, within PS417_19765at 4292.335 kb on - strand, within PS417_19765at 4292.335 kb on - strand, within PS417_19765at 4292.335 kb on - strand, within PS417_19765at 4292.335 kb on - strand, within PS417_19765at 4292.335 kb on - strandat 4292.590 kb on + strand, within PS417_19765at 4293.271 kb on + strandat 4293.271 kb on + strandat 4293.272 kb on - strandat 4293.275 kb on + strandat 4293.275 kb on + strandat 4293.275 kb on + strandat 4293.275 kb on + strandat 4293.276 kb on - strandat 4293.276 kb on - strandat 4293.276 kb on - strandat 4293.321 kb on - strandat 4293.348 kb on - strandat 4293.362 kb on + strandat 4293.389 kb on - strandat 4293.744 kb on + strandat 4293.744 kb on + strandat 4293.825 kb on - strandat 4293.825 kb on - strandat 4293.847 kb on - strandat 4293.867 kb on + strandat 4294.014 kb on + strand, within PS417_19775at 4294.014 kb on + strand, within PS417_19775at 4294.014 kb on + strand, within PS417_19775at 4294.015 kb on - strand, within PS417_19775at 4294.015 kb on - strand, within PS417_19775at 4294.015 kb on - strand, within PS417_19775at 4294.015 kb on - strand, within PS417_19775at 4294.015 kb on - strand, within PS417_19775at 4294.015 kb on - strand, within PS417_19775at 4294.016 kb on + strand, within PS417_19775at 4294.016 kb on + strand, within PS417_19775at 4294.016 kb on + strand, within PS417_19775at 4294.016 kb on + strand, within PS417_19775at 4294.016 kb on + strand, within PS417_19775at 4294.016 kb on + strand, within PS417_19775at 4294.017 kb on - strand, within PS417_19775at 4294.017 kb on - strand, within PS417_19775at 4294.017 kb on - strand, within PS417_19775at 4294.017 kb on - strand, within PS417_19775at 4294.019 kb on - strand, within PS417_19775at 4294.019 kb on - strand, within PS417_19775at 4294.064 kb on - strand, within PS417_19775at 4294.231 kb on + strand, within PS417_19775at 4294.232 kb on - strand, within PS417_19775

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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4,291,060 - PS417_19755 0.86 -0.1
4,291,214 - -0.5
4,291,582 - PS417_19760 0.75 -1.3
4,291,582 - PS417_19760 0.75 -0.0
4,291,587 - PS417_19760 0.76 -0.8
4,291,587 - PS417_19760 0.76 +0.1
4,291,587 - PS417_19760 0.76 -0.2
4,291,587 - PS417_19760 0.76 -0.1
4,291,636 + PS417_19760 0.86 -0.6
4,291,648 - PS417_19760 0.89 +0.0
4,291,659 + +2.0
4,291,660 - +0.9
4,291,660 - +0.2
4,291,660 - -0.9
4,291,736 - +1.1
4,291,857 - -0.4
4,291,884 + -1.8
4,291,885 - -0.1
4,291,947 + +0.5
4,291,948 - +0.6
4,291,951 - -0.0
4,291,951 - +0.8
4,292,201 + PS417_19765 0.20 +0.4
4,292,202 - PS417_19765 0.20 +0.7
4,292,334 + PS417_19765 0.30 -0.5
4,292,334 + PS417_19765 0.30 +0.5
4,292,334 + PS417_19765 0.30 +1.2
4,292,335 - PS417_19765 0.30 +0.2
4,292,335 - PS417_19765 0.30 +1.3
4,292,335 - PS417_19765 0.30 +0.9
4,292,335 - PS417_19765 0.30 +0.5
4,292,335 - +1.8
4,292,590 + PS417_19765 0.49 +0.7
4,293,271 + +0.5
4,293,271 + -0.8
4,293,272 - +1.2
4,293,275 + -0.0
4,293,275 + +0.1
4,293,275 + -0.4
4,293,275 + +0.5
4,293,276 - -1.2
4,293,276 - +0.2
4,293,276 - +0.9
4,293,321 - -0.6
4,293,348 - -1.1
4,293,362 + +0.0
4,293,389 - +0.4
4,293,744 + -0.9
4,293,744 + -1.7
4,293,825 - +2.2
4,293,825 - +0.3
4,293,847 - +1.4
4,293,867 + -0.6
4,294,014 + PS417_19775 0.13 +0.6
4,294,014 + PS417_19775 0.13 -0.2
4,294,014 + PS417_19775 0.13 +1.2
4,294,015 - PS417_19775 0.13 +1.0
4,294,015 - PS417_19775 0.13 +0.2
4,294,015 - PS417_19775 0.13 +0.4
4,294,015 - PS417_19775 0.13 +1.4
4,294,015 - PS417_19775 0.13 -0.3
4,294,015 - PS417_19775 0.13 -0.4
4,294,016 + PS417_19775 0.13 +2.8
4,294,016 + PS417_19775 0.13 -0.3
4,294,016 + PS417_19775 0.13 -1.1
4,294,016 + PS417_19775 0.13 -0.6
4,294,016 + PS417_19775 0.13 -0.7
4,294,016 + PS417_19775 0.13 +1.3
4,294,017 - PS417_19775 0.13 +0.3
4,294,017 - PS417_19775 0.13 +0.7
4,294,017 - PS417_19775 0.13 +0.8
4,294,017 - PS417_19775 0.13 +2.1
4,294,019 - PS417_19775 0.14 +0.5
4,294,019 - PS417_19775 0.14 -0.0
4,294,064 - PS417_19775 0.16 +2.3
4,294,231 + PS417_19775 0.26 -0.6
4,294,232 - PS417_19775 0.26 -0.6

Or see this region's nucleotide sequence