Strain Fitness in Pseudomonas simiae WCS417 around PS417_16680

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16665 and PS417_16675 are separated by 304 nucleotidesPS417_16675 and PS417_16680 are separated by 41 nucleotidesPS417_16680 and PS417_16685 are separated by 46 nucleotides PS417_16665: PS417_16665 - hypothetical protein, at 3,640,610 to 3,640,810 _16665 PS417_16675: PS417_16675 - hypothetical protein, at 3,641,115 to 3,641,636 _16675 PS417_16680: PS417_16680 - MFS transporter, at 3,641,678 to 3,642,808 _16680 PS417_16685: PS417_16685 - multidrug MFS transporter, at 3,642,855 to 3,644,219 _16685 Position (kb) 3641 3642 3643Strain fitness (log2 ratio) -2 -1 0 1at 3640.991 kb on + strandat 3640.992 kb on - strandat 3640.992 kb on - strandat 3641.024 kb on - strandat 3641.024 kb on - strandat 3641.027 kb on + strandat 3641.027 kb on + strandat 3641.028 kb on - strandat 3641.033 kb on + strandat 3641.169 kb on - strand, within PS417_16675at 3641.169 kb on - strand, within PS417_16675at 3641.169 kb on - strand, within PS417_16675at 3641.171 kb on + strand, within PS417_16675at 3641.171 kb on + strand, within PS417_16675at 3641.172 kb on - strand, within PS417_16675at 3641.362 kb on - strand, within PS417_16675at 3641.404 kb on + strand, within PS417_16675at 3641.404 kb on + strand, within PS417_16675at 3641.404 kb on + strandat 3641.405 kb on - strand, within PS417_16675at 3641.405 kb on - strand, within PS417_16675at 3641.552 kb on + strand, within PS417_16675at 3641.552 kb on + strand, within PS417_16675at 3641.649 kb on - strandat 3641.949 kb on + strand, within PS417_16680at 3641.949 kb on + strand, within PS417_16680at 3642.600 kb on + strand, within PS417_16680at 3642.718 kb on - strandat 3642.853 kb on - strandat 3642.886 kb on - strandat 3643.326 kb on - strand, within PS417_16685at 3643.763 kb on + strand, within PS417_16685at 3643.763 kb on + strand, within PS417_16685at 3643.764 kb on - strand, within PS417_16685at 3643.790 kb on + strand, within PS417_16685at 3643.790 kb on + strand, within PS417_16685at 3643.790 kb on + strand, within PS417_16685at 3643.791 kb on - strand, within PS417_16685at 3643.791 kb on - strand, within PS417_16685at 3643.792 kb on + strand, within PS417_16685at 3643.793 kb on - strand, within PS417_16685

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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3,640,991 + -0.7
3,640,992 - -0.6
3,640,992 - -1.3
3,641,024 - -1.8
3,641,024 - -1.3
3,641,027 + -0.6
3,641,027 + -0.4
3,641,028 - -0.3
3,641,033 + -0.6
3,641,169 - PS417_16675 0.10 +0.5
3,641,169 - PS417_16675 0.10 -0.7
3,641,169 - PS417_16675 0.10 +0.0
3,641,171 + PS417_16675 0.11 -0.2
3,641,171 + PS417_16675 0.11 -0.5
3,641,172 - PS417_16675 0.11 -0.4
3,641,362 - PS417_16675 0.47 -0.6
3,641,404 + PS417_16675 0.55 -0.1
3,641,404 + PS417_16675 0.55 -0.8
3,641,404 + -1.5
3,641,405 - PS417_16675 0.56 -0.0
3,641,405 - PS417_16675 0.56 -1.0
3,641,552 + PS417_16675 0.84 +0.1
3,641,552 + PS417_16675 0.84 +0.4
3,641,649 - -0.1
3,641,949 + PS417_16680 0.24 +0.7
3,641,949 + PS417_16680 0.24 +0.9
3,642,600 + PS417_16680 0.82 -0.1
3,642,718 - -0.3
3,642,853 - -0.1
3,642,886 - +0.2
3,643,326 - PS417_16685 0.35 -0.8
3,643,763 + PS417_16685 0.67 -0.1
3,643,763 + PS417_16685 0.67 +0.4
3,643,764 - PS417_16685 0.67 +0.5
3,643,790 + PS417_16685 0.68 +0.9
3,643,790 + PS417_16685 0.68 -0.9
3,643,790 + PS417_16685 0.68 +0.4
3,643,791 - PS417_16685 0.69 +0.1
3,643,791 - PS417_16685 0.69 +0.1
3,643,792 + PS417_16685 0.69 -0.6
3,643,793 - PS417_16685 0.69 -1.1

Or see this region's nucleotide sequence