Strain Fitness in Pseudomonas simiae WCS417 around PS417_16225

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16215 and PS417_16220 are separated by 32 nucleotidesPS417_16220 and PS417_16225 are separated by 10 nucleotidesPS417_16225 and PS417_16230 are separated by 10 nucleotidesPS417_16230 and PS417_16235 overlap by 4 nucleotides PS417_16215: PS417_16215 - ABC transporter substrate-binding protein, at 3,553,549 to 3,555,291 _16215 PS417_16220: PS417_16220 - membrane protein, at 3,555,324 to 3,555,596 _16220 PS417_16225: PS417_16225 - sugar ABC transporter permease, at 3,555,607 to 3,556,407 _16225 PS417_16230: PS417_16230 - ABC transporter permease, at 3,556,418 to 3,557,284 _16230 PS417_16235: PS417_16235 - ABC transporter ATP-binding protein, at 3,557,281 to 3,558,378 _16235 Position (kb) 3555 3556 3557Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3554.609 kb on + strand, within PS417_16215at 3554.741 kb on + strandat 3554.742 kb on - strand, within PS417_16215at 3554.742 kb on - strand, within PS417_16215at 3554.912 kb on + strand, within PS417_16215at 3554.913 kb on - strand, within PS417_16215at 3554.913 kb on - strand, within PS417_16215at 3554.913 kb on - strand, within PS417_16215at 3554.913 kb on - strand, within PS417_16215at 3554.913 kb on - strand, within PS417_16215at 3555.109 kb on - strand, within PS417_16215at 3555.262 kb on - strandat 3555.273 kb on + strandat 3555.282 kb on + strandat 3555.283 kb on - strandat 3555.291 kb on + strandat 3555.292 kb on - strandat 3555.310 kb on + strandat 3555.422 kb on - strand, within PS417_16220at 3555.681 kb on + strandat 3555.681 kb on + strandat 3556.043 kb on + strand, within PS417_16225at 3556.043 kb on + strand, within PS417_16225at 3556.044 kb on - strand, within PS417_16225at 3556.198 kb on + strand, within PS417_16225at 3556.198 kb on + strand, within PS417_16225at 3556.198 kb on + strand, within PS417_16225at 3556.199 kb on - strand, within PS417_16225at 3556.199 kb on - strand, within PS417_16225at 3556.202 kb on + strand, within PS417_16225at 3556.202 kb on + strand, within PS417_16225at 3556.203 kb on - strand, within PS417_16225at 3556.205 kb on + strand, within PS417_16225at 3556.230 kb on - strandat 3556.259 kb on + strand, within PS417_16225at 3556.373 kb on + strandat 3556.373 kb on + strandat 3556.373 kb on + strandat 3556.374 kb on - strandat 3556.374 kb on - strandat 3556.374 kb on - strandat 3556.402 kb on - strandat 3556.488 kb on + strandat 3556.489 kb on - strandat 3556.532 kb on + strandat 3556.567 kb on + strand, within PS417_16230at 3556.567 kb on + strand, within PS417_16230at 3556.568 kb on - strand, within PS417_16230at 3556.571 kb on - strand, within PS417_16230at 3556.614 kb on + strand, within PS417_16230at 3556.634 kb on - strand, within PS417_16230at 3556.688 kb on - strand, within PS417_16230at 3556.688 kb on - strand, within PS417_16230at 3556.688 kb on - strand, within PS417_16230at 3556.740 kb on + strand, within PS417_16230at 3556.741 kb on - strand, within PS417_16230at 3556.805 kb on + strand, within PS417_16230at 3556.858 kb on + strand, within PS417_16230at 3556.861 kb on - strand, within PS417_16230at 3556.887 kb on + strand, within PS417_16230at 3557.125 kb on + strand, within PS417_16230at 3557.126 kb on - strand, within PS417_16230at 3557.127 kb on + strand, within PS417_16230at 3557.127 kb on + strand, within PS417_16230at 3557.128 kb on - strand, within PS417_16230at 3557.148 kb on + strand, within PS417_16230at 3557.184 kb on + strand, within PS417_16230at 3557.185 kb on - strand, within PS417_16230at 3557.303 kb on + strandat 3557.316 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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3,554,609 + PS417_16215 0.61 -0.3
3,554,741 + +0.2
3,554,742 - PS417_16215 0.68 -1.6
3,554,742 - PS417_16215 0.68 +0.4
3,554,912 + PS417_16215 0.78 +0.0
3,554,913 - PS417_16215 0.78 -0.5
3,554,913 - PS417_16215 0.78 +0.7
3,554,913 - PS417_16215 0.78 -1.1
3,554,913 - PS417_16215 0.78 -3.1
3,554,913 - PS417_16215 0.78 -0.0
3,555,109 - PS417_16215 0.90 -0.7
3,555,262 - -1.0
3,555,273 + -0.5
3,555,282 + -0.7
3,555,283 - +0.1
3,555,291 + -0.7
3,555,292 - -0.4
3,555,310 + +0.4
3,555,422 - PS417_16220 0.36 -0.5
3,555,681 + +0.2
3,555,681 + -0.7
3,556,043 + PS417_16225 0.54 -0.0
3,556,043 + PS417_16225 0.54 +0.4
3,556,044 - PS417_16225 0.55 +0.5
3,556,198 + PS417_16225 0.74 +0.1
3,556,198 + PS417_16225 0.74 +2.4
3,556,198 + PS417_16225 0.74 -0.3
3,556,199 - PS417_16225 0.74 -0.6
3,556,199 - PS417_16225 0.74 +0.9
3,556,202 + PS417_16225 0.74 +1.9
3,556,202 + PS417_16225 0.74 +1.0
3,556,203 - PS417_16225 0.74 +0.6
3,556,205 + PS417_16225 0.75 +0.3
3,556,230 - +0.9
3,556,259 + PS417_16225 0.81 +0.2
3,556,373 + -1.5
3,556,373 + -1.6
3,556,373 + -0.9
3,556,374 - -0.4
3,556,374 - -1.5
3,556,374 - -0.1
3,556,402 - -0.1
3,556,488 + -0.3
3,556,489 - +1.3
3,556,532 + -0.9
3,556,567 + PS417_16230 0.17 +0.0
3,556,567 + PS417_16230 0.17 +1.3
3,556,568 - PS417_16230 0.17 -0.6
3,556,571 - PS417_16230 0.18 +1.1
3,556,614 + PS417_16230 0.23 -0.1
3,556,634 - PS417_16230 0.25 +0.9
3,556,688 - PS417_16230 0.31 -0.1
3,556,688 - PS417_16230 0.31 +0.4
3,556,688 - PS417_16230 0.31 -0.8
3,556,740 + PS417_16230 0.37 +1.1
3,556,741 - PS417_16230 0.37 -0.9
3,556,805 + PS417_16230 0.45 +2.5
3,556,858 + PS417_16230 0.51 +0.2
3,556,861 - PS417_16230 0.51 +0.2
3,556,887 + PS417_16230 0.54 +0.7
3,557,125 + PS417_16230 0.82 -1.7
3,557,126 - PS417_16230 0.82 +0.7
3,557,127 + PS417_16230 0.82 +2.9
3,557,127 + PS417_16230 0.82 +2.4
3,557,128 - PS417_16230 0.82 -0.3
3,557,148 + PS417_16230 0.84 -1.7
3,557,184 + PS417_16230 0.88 +0.4
3,557,185 - PS417_16230 0.88 +0.4
3,557,303 + +0.0
3,557,316 - +0.5

Or see this region's nucleotide sequence