Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15810 and PS417_15815 are separated by 125 nucleotides PS417_15815 and PS417_15820 are separated by 36 nucleotides PS417_15820 and PS417_15825 are separated by 319 nucleotides
PS417_15810: PS417_15810 - hypothetical protein, at 3,463,988 to 3,464,317
_15810
PS417_15815: PS417_15815 - hydrolase, at 3,464,443 to 3,464,952
_15815
PS417_15820: PS417_15820 - universal stress protein UspA, at 3,464,989 to 3,465,891
_15820
PS417_15825: PS417_15825 - Crp/Fnr family transcriptional regulator, at 3,466,211 to 3,466,957
_15825
Position (kb)
3464
3465
3466 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3464.141 kb on - strand, within PS417_15810 at 3464.173 kb on - strand, within PS417_15810 at 3464.184 kb on + strand, within PS417_15810 at 3464.217 kb on + strand, within PS417_15810 at 3464.217 kb on + strand at 3464.218 kb on - strand, within PS417_15810 at 3464.231 kb on + strand at 3464.257 kb on - strand, within PS417_15810 at 3464.656 kb on + strand, within PS417_15815 at 3464.656 kb on + strand, within PS417_15815 at 3464.657 kb on - strand, within PS417_15815 at 3464.657 kb on - strand, within PS417_15815 at 3464.657 kb on - strand, within PS417_15815 at 3464.658 kb on + strand, within PS417_15815 at 3464.659 kb on - strand, within PS417_15815 at 3464.950 kb on + strand at 3464.996 kb on - strand at 3465.601 kb on + strand, within PS417_15820 at 3465.702 kb on - strand, within PS417_15820 at 3465.767 kb on + strand, within PS417_15820 at 3465.880 kb on - strand at 3466.016 kb on - strand at 3466.016 kb on - strand at 3466.020 kb on - strand at 3466.151 kb on - strand at 3466.177 kb on + strand at 3466.177 kb on + strand at 3466.374 kb on - strand, within PS417_15825 at 3466.521 kb on + strand, within PS417_15825 at 3466.521 kb on + strand, within PS417_15825 at 3466.522 kb on - strand, within PS417_15825 at 3466.522 kb on - strand, within PS417_15825 at 3466.754 kb on + strand, within PS417_15825 at 3466.805 kb on + strand, within PS417_15825 at 3466.806 kb on - strand, within PS417_15825 at 3466.809 kb on + strand, within PS417_15825 at 3466.809 kb on + strand, within PS417_15825 at 3466.809 kb on + strand, within PS417_15825 at 3466.810 kb on - strand, within PS417_15825 at 3466.810 kb on - strand, within PS417_15825
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 3,464,141 - PS417_15810 0.46 -0.7 3,464,173 - PS417_15810 0.56 +0.0 3,464,184 + PS417_15810 0.59 -1.0 3,464,217 + PS417_15810 0.69 -0.2 3,464,217 + +2.5 3,464,218 - PS417_15810 0.70 +0.2 3,464,231 + +0.9 3,464,257 - PS417_15810 0.82 +0.3 3,464,656 + PS417_15815 0.42 +1.1 3,464,656 + PS417_15815 0.42 +0.0 3,464,657 - PS417_15815 0.42 -0.1 3,464,657 - PS417_15815 0.42 +0.1 3,464,657 - PS417_15815 0.42 +0.0 3,464,658 + PS417_15815 0.42 -3.4 3,464,659 - PS417_15815 0.42 -1.4 3,464,950 + -0.4 3,464,996 - +0.1 3,465,601 + PS417_15820 0.68 +1.0 3,465,702 - PS417_15820 0.79 -0.1 3,465,767 + PS417_15820 0.86 +0.6 3,465,880 - -0.4 3,466,016 - -1.4 3,466,016 - -0.7 3,466,020 - +0.3 3,466,151 - +0.5 3,466,177 + -0.2 3,466,177 + -0.6 3,466,374 - PS417_15825 0.22 -2.1 3,466,521 + PS417_15825 0.41 -0.1 3,466,521 + PS417_15825 0.41 +0.6 3,466,522 - PS417_15825 0.42 -0.2 3,466,522 - PS417_15825 0.42 -0.5 3,466,754 + PS417_15825 0.73 -0.3 3,466,805 + PS417_15825 0.80 +0.1 3,466,806 - PS417_15825 0.80 +0.2 3,466,809 + PS417_15825 0.80 -0.4 3,466,809 + PS417_15825 0.80 -0.6 3,466,809 + PS417_15825 0.80 +1.3 3,466,810 - PS417_15825 0.80 -1.8 3,466,810 - PS417_15825 0.80 +1.2
Or see this region's nucleotide sequence