Strain Fitness in Pseudomonas simiae WCS417 around PS417_15475

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15470 and PS417_15475 are separated by 174 nucleotidesPS417_15475 and PS417_15480 are separated by 215 nucleotidesPS417_15480 and PS417_15485 overlap by 4 nucleotides PS417_15470: PS417_15470 - saccharopine dehydrogenase, at 3,389,559 to 3,390,803 _15470 PS417_15475: PS417_15475 - IclR family transcriptional regulator, at 3,390,978 to 3,391,757 _15475 PS417_15480: PS417_15480 - ABC transporter substrate-binding protein, at 3,391,973 to 3,392,755 _15480 PS417_15485: PS417_15485 - amino acid ABC transporter permease, at 3,392,752 to 3,393,420 _15485 Position (kb) 3390 3391 3392Strain fitness (log2 ratio) -1 0 1 2at 3390.352 kb on - strand, within PS417_15470at 3390.352 kb on - strand, within PS417_15470at 3390.562 kb on - strand, within PS417_15470at 3390.562 kb on - strand, within PS417_15470at 3390.562 kb on - strand, within PS417_15470at 3390.618 kb on + strand, within PS417_15470at 3390.618 kb on + strand, within PS417_15470at 3390.631 kb on + strand, within PS417_15470at 3390.872 kb on + strandat 3390.872 kb on + strandat 3390.873 kb on - strandat 3390.878 kb on - strandat 3391.313 kb on - strand, within PS417_15475at 3391.336 kb on + strand, within PS417_15475at 3391.337 kb on - strand, within PS417_15475at 3391.405 kb on + strand, within PS417_15475at 3391.405 kb on + strand, within PS417_15475at 3391.406 kb on - strand, within PS417_15475at 3391.517 kb on - strand, within PS417_15475at 3391.555 kb on + strand, within PS417_15475at 3391.555 kb on + strand, within PS417_15475at 3391.609 kb on - strand, within PS417_15475at 3391.763 kb on - strandat 3391.827 kb on - strandat 3392.067 kb on - strand, within PS417_15480at 3392.395 kb on - strand, within PS417_15480at 3392.423 kb on + strand, within PS417_15480at 3392.423 kb on + strand, within PS417_15480at 3392.469 kb on - strand, within PS417_15480

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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3,390,352 - PS417_15470 0.64 -0.3
3,390,352 - PS417_15470 0.64 -0.5
3,390,562 - PS417_15470 0.81 +0.5
3,390,562 - PS417_15470 0.81 -0.4
3,390,562 - PS417_15470 0.81 -1.1
3,390,618 + PS417_15470 0.85 -0.7
3,390,618 + PS417_15470 0.85 +0.6
3,390,631 + PS417_15470 0.86 +0.3
3,390,872 + -0.1
3,390,872 + -0.2
3,390,873 - +0.9
3,390,878 - -0.7
3,391,313 - PS417_15475 0.43 -1.7
3,391,336 + PS417_15475 0.46 -0.4
3,391,337 - PS417_15475 0.46 +0.9
3,391,405 + PS417_15475 0.55 +0.4
3,391,405 + PS417_15475 0.55 +1.9
3,391,406 - PS417_15475 0.55 +1.9
3,391,517 - PS417_15475 0.69 +0.7
3,391,555 + PS417_15475 0.74 -0.2
3,391,555 + PS417_15475 0.74 -1.1
3,391,609 - PS417_15475 0.81 +1.7
3,391,763 - -0.5
3,391,827 - +0.4
3,392,067 - PS417_15480 0.12 -0.3
3,392,395 - PS417_15480 0.54 -0.7
3,392,423 + PS417_15480 0.57 -0.5
3,392,423 + PS417_15480 0.57 +0.9
3,392,469 - PS417_15480 0.63 -0.1

Or see this region's nucleotide sequence