Strain Fitness in Pseudomonas simiae WCS417 around PS417_15030

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15025 and PS417_15030 are separated by 9 nucleotidesPS417_15030 and PS417_15035 are separated by 0 nucleotidesPS417_15035 and PS417_15040 are separated by 154 nucleotides PS417_15025: PS417_15025 - aminoglycoside phosphotransferase, at 3,284,521 to 3,285,588 _15025 PS417_15030: PS417_15030 - short-chain dehydrogenase, at 3,285,598 to 3,286,365 _15030 PS417_15035: PS417_15035 - alkylhydroperoxidase, at 3,286,366 to 3,286,809 _15035 PS417_15040: PS417_15040 - DNA-binding protein, at 3,286,964 to 3,288,397 _15040 Position (kb) 3285 3286 3287Strain fitness (log2 ratio) -2 -1 0 1 2at 3284.668 kb on + strand, within PS417_15025at 3284.668 kb on + strand, within PS417_15025at 3284.668 kb on + strand, within PS417_15025at 3284.669 kb on - strand, within PS417_15025at 3284.669 kb on - strand, within PS417_15025at 3284.809 kb on + strand, within PS417_15025at 3284.810 kb on - strand, within PS417_15025at 3284.851 kb on + strandat 3285.104 kb on + strand, within PS417_15025at 3285.324 kb on + strand, within PS417_15025at 3285.324 kb on + strand, within PS417_15025at 3285.325 kb on - strand, within PS417_15025at 3285.382 kb on + strand, within PS417_15025at 3285.427 kb on + strand, within PS417_15025at 3285.430 kb on + strand, within PS417_15025at 3285.430 kb on + strand, within PS417_15025at 3285.430 kb on + strand, within PS417_15025at 3285.436 kb on + strand, within PS417_15025at 3285.436 kb on + strand, within PS417_15025at 3285.436 kb on + strandat 3285.437 kb on - strand, within PS417_15025at 3285.586 kb on + strandat 3285.597 kb on + strandat 3285.597 kb on + strandat 3285.598 kb on - strandat 3285.967 kb on + strand, within PS417_15030at 3286.318 kb on + strandat 3286.589 kb on - strand, within PS417_15035at 3286.787 kb on + strandat 3286.787 kb on + strandat 3286.852 kb on - strandat 3286.867 kb on + strandat 3286.868 kb on - strandat 3286.868 kb on - strandat 3286.875 kb on - strandat 3286.875 kb on - strandat 3286.877 kb on - strandat 3287.013 kb on + strandat 3287.014 kb on - strandat 3287.014 kb on - strandat 3287.014 kb on - strandat 3287.015 kb on + strandat 3287.016 kb on - strandat 3287.016 kb on - strandat 3287.016 kb on - strandat 3287.132 kb on + strand, within PS417_15040at 3287.133 kb on - strandat 3287.148 kb on - strand, within PS417_15040at 3287.148 kb on - strand, within PS417_15040

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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3,284,668 + PS417_15025 0.14 +0.7
3,284,668 + PS417_15025 0.14 -0.9
3,284,668 + PS417_15025 0.14 +0.2
3,284,669 - PS417_15025 0.14 +0.2
3,284,669 - PS417_15025 0.14 -0.1
3,284,809 + PS417_15025 0.27 +0.9
3,284,810 - PS417_15025 0.27 +0.7
3,284,851 + +1.0
3,285,104 + PS417_15025 0.55 -0.7
3,285,324 + PS417_15025 0.75 +0.6
3,285,324 + PS417_15025 0.75 +1.1
3,285,325 - PS417_15025 0.75 +1.5
3,285,382 + PS417_15025 0.81 -0.8
3,285,427 + PS417_15025 0.85 +0.4
3,285,430 + PS417_15025 0.85 +1.5
3,285,430 + PS417_15025 0.85 -0.5
3,285,430 + PS417_15025 0.85 -0.0
3,285,436 + PS417_15025 0.86 -2.4
3,285,436 + PS417_15025 0.86 +0.5
3,285,436 + +1.4
3,285,437 - PS417_15025 0.86 -0.5
3,285,586 + -0.5
3,285,597 + -0.0
3,285,597 + -0.5
3,285,598 - +1.2
3,285,967 + PS417_15030 0.48 +0.9
3,286,318 + +0.4
3,286,589 - PS417_15035 0.50 -0.1
3,286,787 + +1.2
3,286,787 + +2.0
3,286,852 - +0.0
3,286,867 + +0.2
3,286,868 - +0.9
3,286,868 - -0.1
3,286,875 - +0.5
3,286,875 - +0.1
3,286,877 - +0.5
3,287,013 + +1.0
3,287,014 - -0.8
3,287,014 - -0.5
3,287,014 - -0.1
3,287,015 + -0.3
3,287,016 - +0.3
3,287,016 - +0.8
3,287,016 - +0.1
3,287,132 + PS417_15040 0.12 -0.2
3,287,133 - +0.5
3,287,148 - PS417_15040 0.13 +0.7
3,287,148 - PS417_15040 0.13 -0.4

Or see this region's nucleotide sequence