Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15025 and PS417_15030 are separated by 9 nucleotides PS417_15030 and PS417_15035 are separated by 0 nucleotides PS417_15035 and PS417_15040 are separated by 154 nucleotides
PS417_15025: PS417_15025 - aminoglycoside phosphotransferase, at 3,284,521 to 3,285,588
_15025
PS417_15030: PS417_15030 - short-chain dehydrogenase, at 3,285,598 to 3,286,365
_15030
PS417_15035: PS417_15035 - alkylhydroperoxidase, at 3,286,366 to 3,286,809
_15035
PS417_15040: PS417_15040 - DNA-binding protein, at 3,286,964 to 3,288,397
_15040
Position (kb)
3285
3286
3287 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3284.668 kb on + strand, within PS417_15025 at 3284.668 kb on + strand, within PS417_15025 at 3284.668 kb on + strand, within PS417_15025 at 3284.669 kb on - strand, within PS417_15025 at 3284.669 kb on - strand, within PS417_15025 at 3284.809 kb on + strand, within PS417_15025 at 3284.810 kb on - strand, within PS417_15025 at 3284.851 kb on + strand at 3285.104 kb on + strand, within PS417_15025 at 3285.324 kb on + strand, within PS417_15025 at 3285.324 kb on + strand, within PS417_15025 at 3285.325 kb on - strand, within PS417_15025 at 3285.382 kb on + strand, within PS417_15025 at 3285.427 kb on + strand, within PS417_15025 at 3285.430 kb on + strand, within PS417_15025 at 3285.430 kb on + strand, within PS417_15025 at 3285.430 kb on + strand, within PS417_15025 at 3285.436 kb on + strand, within PS417_15025 at 3285.436 kb on + strand, within PS417_15025 at 3285.436 kb on + strand at 3285.437 kb on - strand, within PS417_15025 at 3285.586 kb on + strand at 3285.597 kb on + strand at 3285.597 kb on + strand at 3285.598 kb on - strand at 3285.967 kb on + strand, within PS417_15030 at 3286.318 kb on + strand at 3286.589 kb on - strand, within PS417_15035 at 3286.787 kb on + strand at 3286.787 kb on + strand at 3286.852 kb on - strand at 3286.867 kb on + strand at 3286.868 kb on - strand at 3286.868 kb on - strand at 3286.875 kb on - strand at 3286.875 kb on - strand at 3286.877 kb on - strand at 3287.013 kb on + strand at 3287.014 kb on - strand at 3287.014 kb on - strand at 3287.014 kb on - strand at 3287.015 kb on + strand at 3287.016 kb on - strand at 3287.016 kb on - strand at 3287.016 kb on - strand at 3287.132 kb on + strand, within PS417_15040 at 3287.133 kb on - strand at 3287.148 kb on - strand, within PS417_15040 at 3287.148 kb on - strand, within PS417_15040
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 3,284,668 + PS417_15025 0.14 +0.7 3,284,668 + PS417_15025 0.14 -0.9 3,284,668 + PS417_15025 0.14 +0.2 3,284,669 - PS417_15025 0.14 +0.2 3,284,669 - PS417_15025 0.14 -0.1 3,284,809 + PS417_15025 0.27 +0.9 3,284,810 - PS417_15025 0.27 +0.7 3,284,851 + +1.0 3,285,104 + PS417_15025 0.55 -0.7 3,285,324 + PS417_15025 0.75 +0.6 3,285,324 + PS417_15025 0.75 +1.1 3,285,325 - PS417_15025 0.75 +1.5 3,285,382 + PS417_15025 0.81 -0.8 3,285,427 + PS417_15025 0.85 +0.4 3,285,430 + PS417_15025 0.85 +1.5 3,285,430 + PS417_15025 0.85 -0.5 3,285,430 + PS417_15025 0.85 -0.0 3,285,436 + PS417_15025 0.86 -2.4 3,285,436 + PS417_15025 0.86 +0.5 3,285,436 + +1.4 3,285,437 - PS417_15025 0.86 -0.5 3,285,586 + -0.5 3,285,597 + -0.0 3,285,597 + -0.5 3,285,598 - +1.2 3,285,967 + PS417_15030 0.48 +0.9 3,286,318 + +0.4 3,286,589 - PS417_15035 0.50 -0.1 3,286,787 + +1.2 3,286,787 + +2.0 3,286,852 - +0.0 3,286,867 + +0.2 3,286,868 - +0.9 3,286,868 - -0.1 3,286,875 - +0.5 3,286,875 - +0.1 3,286,877 - +0.5 3,287,013 + +1.0 3,287,014 - -0.8 3,287,014 - -0.5 3,287,014 - -0.1 3,287,015 + -0.3 3,287,016 - +0.3 3,287,016 - +0.8 3,287,016 - +0.1 3,287,132 + PS417_15040 0.12 -0.2 3,287,133 - +0.5 3,287,148 - PS417_15040 0.13 +0.7 3,287,148 - PS417_15040 0.13 -0.4
Or see this region's nucleotide sequence