Strain Fitness in Pseudomonas simiae WCS417 around PS417_14655

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14650 and PS417_14655 are separated by 127 nucleotidesPS417_14655 and PS417_14660 are separated by 60 nucleotidesPS417_14660 and PS417_14665 are separated by 111 nucleotides PS417_14650: PS417_14650 - chemotaxis protein, at 3,200,581 to 3,202,146 _14650 PS417_14655: PS417_14655 - lysine transporter LysE, at 3,202,274 to 3,202,894 _14655 PS417_14660: PS417_14660 - methyltransferase, at 3,202,955 to 3,203,611 _14660 PS417_14665: PS417_14665 - TetR family transcriptional regulator, at 3,203,723 to 3,204,355 _14665 Position (kb) 3202 3203Strain fitness (log2 ratio) -1 0 1 2at 3202.058 kb on + strandat 3202.059 kb on - strandat 3202.235 kb on - strandat 3202.505 kb on + strand, within PS417_14655at 3203.040 kb on + strand, within PS417_14660at 3203.041 kb on - strand, within PS417_14660at 3203.053 kb on - strandat 3203.124 kb on + strand, within PS417_14660at 3203.159 kb on + strandat 3203.406 kb on + strand, within PS417_14660at 3203.406 kb on + strand, within PS417_14660at 3203.407 kb on - strand, within PS417_14660at 3203.464 kb on - strand, within PS417_14660at 3203.475 kb on + strand, within PS417_14660at 3203.562 kb on + strandat 3203.562 kb on + strandat 3203.563 kb on - strandat 3203.611 kb on + strandat 3203.612 kb on - strandat 3203.722 kb on + strandat 3203.746 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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3,202,058 + -0.6
3,202,059 - +1.2
3,202,235 - +0.0
3,202,505 + PS417_14655 0.37 +0.6
3,203,040 + PS417_14660 0.13 +0.3
3,203,041 - PS417_14660 0.13 +2.4
3,203,053 - -1.4
3,203,124 + PS417_14660 0.26 +0.3
3,203,159 + +0.4
3,203,406 + PS417_14660 0.69 -0.9
3,203,406 + PS417_14660 0.69 -0.2
3,203,407 - PS417_14660 0.69 -0.6
3,203,464 - PS417_14660 0.77 -0.2
3,203,475 + PS417_14660 0.79 -0.6
3,203,562 + +0.1
3,203,562 + +0.4
3,203,563 - -0.3
3,203,611 + -0.4
3,203,612 - -0.9
3,203,722 + +1.2
3,203,746 + -0.9

Or see this region's nucleotide sequence