Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_13950 and PS417_13955 are separated by 111 nucleotides PS417_13955 and PS417_13960 are separated by 21 nucleotides
PS417_13950: PS417_13950 - LuxR family transcriptional regulator, at 3,064,647 to 3,065,618
_13950
PS417_13955: PS417_13955 - protein QbdB, at 3,065,730 to 3,066,605
_13955
PS417_13960: PS417_13960 - MFS transporter, at 3,066,627 to 3,067,778
_13960
Position (kb)
3065
3066
3067 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3064.774 kb on + strand, within PS417_13950 at 3064.775 kb on - strand at 3064.852 kb on - strand, within PS417_13950 at 3064.928 kb on + strand at 3065.204 kb on + strand, within PS417_13950 at 3065.205 kb on - strand, within PS417_13950 at 3065.553 kb on + strand at 3065.553 kb on + strand at 3065.553 kb on + strand at 3065.553 kb on + strand at 3065.554 kb on - strand at 3065.755 kb on + strand at 3065.756 kb on - strand at 3065.756 kb on - strand at 3065.862 kb on + strand, within PS417_13955 at 3065.959 kb on - strand, within PS417_13955 at 3066.126 kb on + strand, within PS417_13955 at 3066.127 kb on - strand, within PS417_13955 at 3066.228 kb on + strand, within PS417_13955 at 3066.234 kb on + strand, within PS417_13955 at 3066.234 kb on + strand, within PS417_13955 at 3066.235 kb on - strand, within PS417_13955 at 3066.235 kb on - strand, within PS417_13955 at 3066.343 kb on - strand, within PS417_13955 at 3066.367 kb on - strand, within PS417_13955 at 3066.387 kb on + strand, within PS417_13955 at 3066.469 kb on - strand, within PS417_13955 at 3066.645 kb on - strand at 3066.918 kb on + strand at 3066.918 kb on + strand, within PS417_13960 at 3066.918 kb on + strand, within PS417_13960 at 3066.918 kb on + strand, within PS417_13960 at 3066.918 kb on + strand, within PS417_13960 at 3066.919 kb on - strand at 3066.919 kb on - strand, within PS417_13960 at 3066.919 kb on - strand, within PS417_13960 at 3066.919 kb on - strand, within PS417_13960 at 3066.919 kb on - strand, within PS417_13960 at 3067.263 kb on + strand, within PS417_13960 at 3067.264 kb on - strand, within PS417_13960 at 3067.264 kb on - strand, within PS417_13960
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 3,064,774 + PS417_13950 0.13 +0.3 3,064,775 - +1.9 3,064,852 - PS417_13950 0.21 +0.4 3,064,928 + +2.5 3,065,204 + PS417_13950 0.57 +0.4 3,065,205 - PS417_13950 0.57 -0.2 3,065,553 + +0.7 3,065,553 + +2.5 3,065,553 + +0.7 3,065,553 + -1.1 3,065,554 - +1.4 3,065,755 + -1.0 3,065,756 - -0.1 3,065,756 - +1.1 3,065,862 + PS417_13955 0.15 -0.1 3,065,959 - PS417_13955 0.26 -1.3 3,066,126 + PS417_13955 0.45 +0.1 3,066,127 - PS417_13955 0.45 -0.5 3,066,228 + PS417_13955 0.57 -1.0 3,066,234 + PS417_13955 0.58 -1.4 3,066,234 + PS417_13955 0.58 -0.5 3,066,235 - PS417_13955 0.58 -0.6 3,066,235 - PS417_13955 0.58 -0.2 3,066,343 - PS417_13955 0.70 -0.8 3,066,367 - PS417_13955 0.73 +0.3 3,066,387 + PS417_13955 0.75 -1.3 3,066,469 - PS417_13955 0.84 -0.1 3,066,645 - -0.1 3,066,918 + -0.1 3,066,918 + PS417_13960 0.25 +2.3 3,066,918 + PS417_13960 0.25 -1.0 3,066,918 + PS417_13960 0.25 -0.5 3,066,918 + PS417_13960 0.25 -0.0 3,066,919 - +0.9 3,066,919 - PS417_13960 0.25 +0.5 3,066,919 - PS417_13960 0.25 +0.1 3,066,919 - PS417_13960 0.25 -0.4 3,066,919 - PS417_13960 0.25 -1.4 3,067,263 + PS417_13960 0.55 +0.9 3,067,264 - PS417_13960 0.55 -0.1 3,067,264 - PS417_13960 0.55 -2.5
Or see this region's nucleotide sequence