Strain Fitness in Pseudomonas simiae WCS417 around PS417_13955

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13950 and PS417_13955 are separated by 111 nucleotidesPS417_13955 and PS417_13960 are separated by 21 nucleotides PS417_13950: PS417_13950 - LuxR family transcriptional regulator, at 3,064,647 to 3,065,618 _13950 PS417_13955: PS417_13955 - protein QbdB, at 3,065,730 to 3,066,605 _13955 PS417_13960: PS417_13960 - MFS transporter, at 3,066,627 to 3,067,778 _13960 Position (kb) 3065 3066 3067Strain fitness (log2 ratio) -2 -1 0 1 2at 3064.774 kb on + strand, within PS417_13950at 3064.775 kb on - strandat 3064.852 kb on - strand, within PS417_13950at 3064.928 kb on + strandat 3065.204 kb on + strand, within PS417_13950at 3065.205 kb on - strand, within PS417_13950at 3065.553 kb on + strandat 3065.553 kb on + strandat 3065.553 kb on + strandat 3065.553 kb on + strandat 3065.554 kb on - strandat 3065.755 kb on + strandat 3065.756 kb on - strandat 3065.756 kb on - strandat 3065.862 kb on + strand, within PS417_13955at 3065.959 kb on - strand, within PS417_13955at 3066.126 kb on + strand, within PS417_13955at 3066.127 kb on - strand, within PS417_13955at 3066.228 kb on + strand, within PS417_13955at 3066.234 kb on + strand, within PS417_13955at 3066.234 kb on + strand, within PS417_13955at 3066.235 kb on - strand, within PS417_13955at 3066.235 kb on - strand, within PS417_13955at 3066.343 kb on - strand, within PS417_13955at 3066.367 kb on - strand, within PS417_13955at 3066.387 kb on + strand, within PS417_13955at 3066.469 kb on - strand, within PS417_13955at 3066.645 kb on - strandat 3066.918 kb on + strandat 3066.918 kb on + strand, within PS417_13960at 3066.918 kb on + strand, within PS417_13960at 3066.918 kb on + strand, within PS417_13960at 3066.918 kb on + strand, within PS417_13960at 3066.919 kb on - strandat 3066.919 kb on - strand, within PS417_13960at 3066.919 kb on - strand, within PS417_13960at 3066.919 kb on - strand, within PS417_13960at 3066.919 kb on - strand, within PS417_13960at 3067.263 kb on + strand, within PS417_13960at 3067.264 kb on - strand, within PS417_13960at 3067.264 kb on - strand, within PS417_13960

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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3,064,774 + PS417_13950 0.13 +0.3
3,064,775 - +1.9
3,064,852 - PS417_13950 0.21 +0.4
3,064,928 + +2.5
3,065,204 + PS417_13950 0.57 +0.4
3,065,205 - PS417_13950 0.57 -0.2
3,065,553 + +0.7
3,065,553 + +2.5
3,065,553 + +0.7
3,065,553 + -1.1
3,065,554 - +1.4
3,065,755 + -1.0
3,065,756 - -0.1
3,065,756 - +1.1
3,065,862 + PS417_13955 0.15 -0.1
3,065,959 - PS417_13955 0.26 -1.3
3,066,126 + PS417_13955 0.45 +0.1
3,066,127 - PS417_13955 0.45 -0.5
3,066,228 + PS417_13955 0.57 -1.0
3,066,234 + PS417_13955 0.58 -1.4
3,066,234 + PS417_13955 0.58 -0.5
3,066,235 - PS417_13955 0.58 -0.6
3,066,235 - PS417_13955 0.58 -0.2
3,066,343 - PS417_13955 0.70 -0.8
3,066,367 - PS417_13955 0.73 +0.3
3,066,387 + PS417_13955 0.75 -1.3
3,066,469 - PS417_13955 0.84 -0.1
3,066,645 - -0.1
3,066,918 + -0.1
3,066,918 + PS417_13960 0.25 +2.3
3,066,918 + PS417_13960 0.25 -1.0
3,066,918 + PS417_13960 0.25 -0.5
3,066,918 + PS417_13960 0.25 -0.0
3,066,919 - +0.9
3,066,919 - PS417_13960 0.25 +0.5
3,066,919 - PS417_13960 0.25 +0.1
3,066,919 - PS417_13960 0.25 -0.4
3,066,919 - PS417_13960 0.25 -1.4
3,067,263 + PS417_13960 0.55 +0.9
3,067,264 - PS417_13960 0.55 -0.1
3,067,264 - PS417_13960 0.55 -2.5

Or see this region's nucleotide sequence