Strain Fitness in Pseudomonas simiae WCS417 around PS417_13175

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13170 and PS417_13175 are separated by 10 nucleotidesPS417_13175 and PS417_13180 are separated by 167 nucleotides PS417_13170: PS417_13170 - multidrug DMT transporter permease, at 2,877,348 to 2,878,550 _13170 PS417_13175: PS417_13175 - iron transporter, at 2,878,561 to 2,879,394 _13175 PS417_13180: PS417_13180 - AraC family transcriptional regulator, at 2,879,562 to 2,880,587 _13180 Position (kb) 2878 2879 2880Strain fitness (log2 ratio) -1 0 1 2at 2877.637 kb on + strand, within PS417_13170at 2877.666 kb on + strand, within PS417_13170at 2877.666 kb on + strand, within PS417_13170at 2877.666 kb on + strand, within PS417_13170at 2877.666 kb on + strand, within PS417_13170at 2877.667 kb on - strand, within PS417_13170at 2877.827 kb on - strand, within PS417_13170at 2877.971 kb on - strand, within PS417_13170at 2878.063 kb on + strand, within PS417_13170at 2878.199 kb on - strand, within PS417_13170at 2878.450 kb on + strandat 2878.451 kb on - strandat 2878.538 kb on + strandat 2878.634 kb on + strandat 2878.643 kb on + strandat 2878.889 kb on + strand, within PS417_13175at 2878.890 kb on - strand, within PS417_13175at 2878.890 kb on - strand, within PS417_13175at 2879.321 kb on + strandat 2879.413 kb on + strandat 2879.414 kb on - strandat 2879.418 kb on - strandat 2879.418 kb on - strandat 2879.418 kb on - strandat 2879.425 kb on + strandat 2879.609 kb on - strandat 2880.033 kb on - strand, within PS417_13180at 2880.033 kb on - strand, within PS417_13180at 2880.225 kb on - strand, within PS417_13180

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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2,877,637 + PS417_13170 0.24 -0.5
2,877,666 + PS417_13170 0.26 +0.4
2,877,666 + PS417_13170 0.26 +0.9
2,877,666 + PS417_13170 0.26 -0.2
2,877,666 + PS417_13170 0.26 +0.1
2,877,667 - PS417_13170 0.27 -0.1
2,877,827 - PS417_13170 0.40 +0.5
2,877,971 - PS417_13170 0.52 -0.2
2,878,063 + PS417_13170 0.59 +1.2
2,878,199 - PS417_13170 0.71 +0.4
2,878,450 + -1.2
2,878,451 - +1.9
2,878,538 + +0.1
2,878,634 + -0.1
2,878,643 + -0.3
2,878,889 + PS417_13175 0.39 +1.4
2,878,890 - PS417_13175 0.39 +0.1
2,878,890 - PS417_13175 0.39 +0.5
2,879,321 + -0.5
2,879,413 + +0.6
2,879,414 - +0.5
2,879,418 - +1.9
2,879,418 - +1.1
2,879,418 - +0.6
2,879,425 + -0.1
2,879,609 - -0.1
2,880,033 - PS417_13180 0.46 +0.4
2,880,033 - PS417_13180 0.46 -0.1
2,880,225 - PS417_13180 0.65 +0.1

Or see this region's nucleotide sequence