Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11920 and PS417_11925 are separated by 138 nucleotides PS417_11925 and PS417_11930 are separated by 440 nucleotides PS417_11930 and PS417_11935 are separated by 133 nucleotides
PS417_11920: PS417_11920 - hypothetical protein, at 2,595,062 to 2,595,292
_11920
PS417_11925: PS417_11925 - hypothetical protein, at 2,595,431 to 2,595,634
_11925
PS417_11930: PS417_11930 - hypothetical protein, at 2,596,075 to 2,596,545
_11930
PS417_11935: PS417_11935 - ABC transporter substrate-binding protein, at 2,596,679 to 2,597,695
_11935
Position (kb)
2596
2597 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2595.294 kb on + strand at 2595.314 kb on - strand at 2595.400 kb on + strand at 2595.400 kb on + strand at 2595.401 kb on - strand at 2595.401 kb on - strand at 2595.406 kb on - strand at 2595.610 kb on - strand, within PS417_11925 at 2595.610 kb on - strand, within PS417_11925 at 2595.612 kb on + strand, within PS417_11925 at 2595.612 kb on + strand, within PS417_11925 at 2595.663 kb on + strand at 2595.663 kb on + strand at 2595.663 kb on + strand at 2595.664 kb on - strand at 2595.754 kb on - strand at 2595.756 kb on + strand at 2595.757 kb on - strand at 2595.757 kb on - strand at 2595.799 kb on + strand at 2595.799 kb on + strand at 2595.800 kb on - strand at 2595.832 kb on + strand at 2595.942 kb on + strand at 2595.942 kb on + strand at 2595.942 kb on + strand at 2595.943 kb on - strand at 2595.943 kb on - strand at 2596.009 kb on - strand at 2596.087 kb on - strand at 2596.165 kb on + strand, within PS417_11930 at 2596.165 kb on + strand, within PS417_11930 at 2596.165 kb on + strand, within PS417_11930 at 2596.166 kb on - strand at 2596.191 kb on + strand, within PS417_11930 at 2596.191 kb on + strand, within PS417_11930 at 2596.191 kb on + strand, within PS417_11930 at 2596.192 kb on - strand, within PS417_11930 at 2596.192 kb on - strand, within PS417_11930 at 2596.192 kb on - strand, within PS417_11930 at 2596.195 kb on + strand, within PS417_11930 at 2596.195 kb on + strand, within PS417_11930 at 2596.195 kb on + strand, within PS417_11930 at 2596.196 kb on - strand, within PS417_11930 at 2596.196 kb on - strand, within PS417_11930 at 2596.363 kb on + strand, within PS417_11930 at 2596.544 kb on - strand at 2596.586 kb on + strand at 2596.587 kb on - strand at 2596.589 kb on + strand at 2596.589 kb on + strand at 2596.590 kb on - strand at 2596.605 kb on + strand at 2596.605 kb on + strand at 2596.609 kb on + strand at 2596.609 kb on + strand at 2596.610 kb on - strand at 2596.628 kb on + strand at 2596.629 kb on - strand at 2596.629 kb on - strand at 2596.862 kb on - strand, within PS417_11935 at 2597.000 kb on - strand, within PS417_11935 at 2597.223 kb on - strand, within PS417_11935 at 2597.240 kb on + strand, within PS417_11935 at 2597.240 kb on + strand, within PS417_11935 at 2597.241 kb on - strand, within PS417_11935 at 2597.241 kb on - strand, within PS417_11935 at 2597.241 kb on - strand, within PS417_11935 at 2597.324 kb on + strand, within PS417_11935 at 2597.324 kb on + strand, within PS417_11935 at 2597.324 kb on + strand, within PS417_11935 at 2597.325 kb on - strand, within PS417_11935 at 2597.327 kb on + strand, within PS417_11935
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 2,595,294 + -0.7 2,595,314 - +0.8 2,595,400 + -0.2 2,595,400 + +0.6 2,595,401 - -0.9 2,595,401 - -0.3 2,595,406 - +0.6 2,595,610 - PS417_11925 0.88 -0.4 2,595,610 - PS417_11925 0.88 -0.0 2,595,612 + PS417_11925 0.89 -0.7 2,595,612 + PS417_11925 0.89 +4.3 2,595,663 + -0.5 2,595,663 + -0.1 2,595,663 + +1.5 2,595,664 - +0.8 2,595,754 - -0.1 2,595,756 + -0.5 2,595,757 - +0.9 2,595,757 - +0.0 2,595,799 + -0.3 2,595,799 + +0.0 2,595,800 - +1.3 2,595,832 + -0.3 2,595,942 + +0.9 2,595,942 + +0.2 2,595,942 + +0.1 2,595,943 - +0.2 2,595,943 - -0.6 2,596,009 - +0.2 2,596,087 - -0.1 2,596,165 + PS417_11930 0.19 +0.8 2,596,165 + PS417_11930 0.19 +0.0 2,596,165 + PS417_11930 0.19 -0.6 2,596,166 - -0.1 2,596,191 + PS417_11930 0.25 +0.3 2,596,191 + PS417_11930 0.25 +0.0 2,596,191 + PS417_11930 0.25 +0.7 2,596,192 - PS417_11930 0.25 +0.0 2,596,192 - PS417_11930 0.25 +0.7 2,596,192 - PS417_11930 0.25 +1.7 2,596,195 + PS417_11930 0.25 +0.1 2,596,195 + PS417_11930 0.25 +0.9 2,596,195 + PS417_11930 0.25 -1.4 2,596,196 - PS417_11930 0.26 +2.3 2,596,196 - PS417_11930 0.26 +1.0 2,596,363 + PS417_11930 0.61 -0.5 2,596,544 - -0.0 2,596,586 + -0.4 2,596,587 - +0.7 2,596,589 + +1.1 2,596,589 + +0.3 2,596,590 - -0.6 2,596,605 + +0.1 2,596,605 + -0.3 2,596,609 + -1.9 2,596,609 + +0.6 2,596,610 - +0.2 2,596,628 + +0.0 2,596,629 - -1.9 2,596,629 - +0.4 2,596,862 - PS417_11935 0.18 +0.2 2,597,000 - PS417_11935 0.32 +0.4 2,597,223 - PS417_11935 0.53 -0.5 2,597,240 + PS417_11935 0.55 +0.3 2,597,240 + PS417_11935 0.55 +0.0 2,597,241 - PS417_11935 0.55 +0.7 2,597,241 - PS417_11935 0.55 -0.4 2,597,241 - PS417_11935 0.55 -0.3 2,597,324 + PS417_11935 0.63 -0.9 2,597,324 + PS417_11935 0.63 +1.6 2,597,324 + PS417_11935 0.63 -0.2 2,597,325 - PS417_11935 0.64 +0.6 2,597,327 + PS417_11935 0.64 +0.2
Or see this region's nucleotide sequence