Strain Fitness in Pseudomonas simiae WCS417 around PS417_11930

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11920 and PS417_11925 are separated by 138 nucleotidesPS417_11925 and PS417_11930 are separated by 440 nucleotidesPS417_11930 and PS417_11935 are separated by 133 nucleotides PS417_11920: PS417_11920 - hypothetical protein, at 2,595,062 to 2,595,292 _11920 PS417_11925: PS417_11925 - hypothetical protein, at 2,595,431 to 2,595,634 _11925 PS417_11930: PS417_11930 - hypothetical protein, at 2,596,075 to 2,596,545 _11930 PS417_11935: PS417_11935 - ABC transporter substrate-binding protein, at 2,596,679 to 2,597,695 _11935 Position (kb) 2596 2597Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2595.294 kb on + strandat 2595.314 kb on - strandat 2595.400 kb on + strandat 2595.400 kb on + strandat 2595.401 kb on - strandat 2595.401 kb on - strandat 2595.406 kb on - strandat 2595.610 kb on - strand, within PS417_11925at 2595.610 kb on - strand, within PS417_11925at 2595.612 kb on + strand, within PS417_11925at 2595.612 kb on + strand, within PS417_11925at 2595.663 kb on + strandat 2595.663 kb on + strandat 2595.663 kb on + strandat 2595.664 kb on - strandat 2595.754 kb on - strandat 2595.756 kb on + strandat 2595.757 kb on - strandat 2595.757 kb on - strandat 2595.799 kb on + strandat 2595.799 kb on + strandat 2595.800 kb on - strandat 2595.832 kb on + strandat 2595.942 kb on + strandat 2595.942 kb on + strandat 2595.942 kb on + strandat 2595.943 kb on - strandat 2595.943 kb on - strandat 2596.009 kb on - strandat 2596.087 kb on - strandat 2596.165 kb on + strand, within PS417_11930at 2596.165 kb on + strand, within PS417_11930at 2596.165 kb on + strand, within PS417_11930at 2596.166 kb on - strandat 2596.191 kb on + strand, within PS417_11930at 2596.191 kb on + strand, within PS417_11930at 2596.191 kb on + strand, within PS417_11930at 2596.192 kb on - strand, within PS417_11930at 2596.192 kb on - strand, within PS417_11930at 2596.192 kb on - strand, within PS417_11930at 2596.195 kb on + strand, within PS417_11930at 2596.195 kb on + strand, within PS417_11930at 2596.195 kb on + strand, within PS417_11930at 2596.196 kb on - strand, within PS417_11930at 2596.196 kb on - strand, within PS417_11930at 2596.363 kb on + strand, within PS417_11930at 2596.544 kb on - strandat 2596.586 kb on + strandat 2596.587 kb on - strandat 2596.589 kb on + strandat 2596.589 kb on + strandat 2596.590 kb on - strandat 2596.605 kb on + strandat 2596.605 kb on + strandat 2596.609 kb on + strandat 2596.609 kb on + strandat 2596.610 kb on - strandat 2596.628 kb on + strandat 2596.629 kb on - strandat 2596.629 kb on - strandat 2596.862 kb on - strand, within PS417_11935at 2597.000 kb on - strand, within PS417_11935at 2597.223 kb on - strand, within PS417_11935at 2597.240 kb on + strand, within PS417_11935at 2597.240 kb on + strand, within PS417_11935at 2597.241 kb on - strand, within PS417_11935at 2597.241 kb on - strand, within PS417_11935at 2597.241 kb on - strand, within PS417_11935at 2597.324 kb on + strand, within PS417_11935at 2597.324 kb on + strand, within PS417_11935at 2597.324 kb on + strand, within PS417_11935at 2597.325 kb on - strand, within PS417_11935at 2597.327 kb on + strand, within PS417_11935

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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2,595,294 + -0.7
2,595,314 - +0.8
2,595,400 + -0.2
2,595,400 + +0.6
2,595,401 - -0.9
2,595,401 - -0.3
2,595,406 - +0.6
2,595,610 - PS417_11925 0.88 -0.4
2,595,610 - PS417_11925 0.88 -0.0
2,595,612 + PS417_11925 0.89 -0.7
2,595,612 + PS417_11925 0.89 +4.3
2,595,663 + -0.5
2,595,663 + -0.1
2,595,663 + +1.5
2,595,664 - +0.8
2,595,754 - -0.1
2,595,756 + -0.5
2,595,757 - +0.9
2,595,757 - +0.0
2,595,799 + -0.3
2,595,799 + +0.0
2,595,800 - +1.3
2,595,832 + -0.3
2,595,942 + +0.9
2,595,942 + +0.2
2,595,942 + +0.1
2,595,943 - +0.2
2,595,943 - -0.6
2,596,009 - +0.2
2,596,087 - -0.1
2,596,165 + PS417_11930 0.19 +0.8
2,596,165 + PS417_11930 0.19 +0.0
2,596,165 + PS417_11930 0.19 -0.6
2,596,166 - -0.1
2,596,191 + PS417_11930 0.25 +0.3
2,596,191 + PS417_11930 0.25 +0.0
2,596,191 + PS417_11930 0.25 +0.7
2,596,192 - PS417_11930 0.25 +0.0
2,596,192 - PS417_11930 0.25 +0.7
2,596,192 - PS417_11930 0.25 +1.7
2,596,195 + PS417_11930 0.25 +0.1
2,596,195 + PS417_11930 0.25 +0.9
2,596,195 + PS417_11930 0.25 -1.4
2,596,196 - PS417_11930 0.26 +2.3
2,596,196 - PS417_11930 0.26 +1.0
2,596,363 + PS417_11930 0.61 -0.5
2,596,544 - -0.0
2,596,586 + -0.4
2,596,587 - +0.7
2,596,589 + +1.1
2,596,589 + +0.3
2,596,590 - -0.6
2,596,605 + +0.1
2,596,605 + -0.3
2,596,609 + -1.9
2,596,609 + +0.6
2,596,610 - +0.2
2,596,628 + +0.0
2,596,629 - -1.9
2,596,629 - +0.4
2,596,862 - PS417_11935 0.18 +0.2
2,597,000 - PS417_11935 0.32 +0.4
2,597,223 - PS417_11935 0.53 -0.5
2,597,240 + PS417_11935 0.55 +0.3
2,597,240 + PS417_11935 0.55 +0.0
2,597,241 - PS417_11935 0.55 +0.7
2,597,241 - PS417_11935 0.55 -0.4
2,597,241 - PS417_11935 0.55 -0.3
2,597,324 + PS417_11935 0.63 -0.9
2,597,324 + PS417_11935 0.63 +1.6
2,597,324 + PS417_11935 0.63 -0.2
2,597,325 - PS417_11935 0.64 +0.6
2,597,327 + PS417_11935 0.64 +0.2

Or see this region's nucleotide sequence