Strain Fitness in Pseudomonas simiae WCS417 around PS417_11900

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11895 and PS417_11900 are separated by 423 nucleotidesPS417_11900 and PS417_11905 are separated by 180 nucleotides PS417_11895: PS417_11895 - Inositol transport system permease protein (from data), at 2,590,805 to 2,591,827 _11895 PS417_11900: PS417_11900 - conjugal transfer protein TraR, at 2,592,251 to 2,592,655 _11900 PS417_11905: PS417_11905 - chemotaxis protein, at 2,592,836 to 2,594,431 _11905 Position (kb) 2592 2593Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2591.300 kb on + strand, within PS417_11895at 2591.300 kb on + strand, within PS417_11895at 2591.300 kb on + strand, within PS417_11895at 2591.301 kb on - strand, within PS417_11895at 2591.339 kb on + strand, within PS417_11895at 2591.404 kb on + strand, within PS417_11895at 2591.435 kb on + strand, within PS417_11895at 2591.436 kb on - strand, within PS417_11895at 2591.436 kb on - strand, within PS417_11895at 2591.436 kb on - strand, within PS417_11895at 2591.436 kb on - strand, within PS417_11895at 2591.436 kb on - strand, within PS417_11895at 2591.441 kb on + strand, within PS417_11895at 2591.441 kb on + strand, within PS417_11895at 2591.441 kb on + strand, within PS417_11895at 2591.442 kb on - strand, within PS417_11895at 2591.442 kb on - strand, within PS417_11895at 2591.442 kb on - strand, within PS417_11895at 2591.513 kb on + strand, within PS417_11895at 2591.514 kb on - strand, within PS417_11895at 2591.741 kb on + strandat 2591.742 kb on - strandat 2591.742 kb on - strandat 2591.889 kb on - strandat 2591.889 kb on - strandat 2591.914 kb on - strandat 2591.984 kb on + strandat 2591.984 kb on + strandat 2591.984 kb on + strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.985 kb on - strandat 2591.986 kb on + strandat 2591.987 kb on - strandat 2591.987 kb on - strandat 2591.988 kb on + strandat 2591.988 kb on + strandat 2591.989 kb on - strandat 2591.989 kb on - strandat 2591.989 kb on - strandat 2591.989 kb on - strandat 2591.989 kb on - strandat 2591.989 kb on - strandat 2592.015 kb on - strandat 2592.017 kb on - strandat 2592.121 kb on - strandat 2592.290 kb on + strandat 2592.290 kb on + strandat 2592.290 kb on + strandat 2592.290 kb on + strandat 2592.291 kb on - strandat 2592.291 kb on - strandat 2592.291 kb on - strandat 2592.442 kb on + strand, within PS417_11900at 2592.511 kb on + strand, within PS417_11900at 2592.512 kb on - strand, within PS417_11900at 2592.596 kb on + strand, within PS417_11900at 2592.597 kb on - strand, within PS417_11900at 2592.741 kb on - strandat 2592.775 kb on + strandat 2592.775 kb on + strandat 2592.960 kb on - strandat 2593.079 kb on + strand, within PS417_11905at 2593.079 kb on + strand, within PS417_11905at 2593.080 kb on - strand, within PS417_11905at 2593.198 kb on - strand, within PS417_11905at 2593.653 kb on + strand, within PS417_11905

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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2,591,300 + PS417_11895 0.48 +1.9
2,591,300 + PS417_11895 0.48 -0.1
2,591,300 + PS417_11895 0.48 +0.0
2,591,301 - PS417_11895 0.48 +0.0
2,591,339 + PS417_11895 0.52 -0.2
2,591,404 + PS417_11895 0.59 +0.2
2,591,435 + PS417_11895 0.62 +0.1
2,591,436 - PS417_11895 0.62 +0.4
2,591,436 - PS417_11895 0.62 +0.7
2,591,436 - PS417_11895 0.62 -1.2
2,591,436 - PS417_11895 0.62 +0.0
2,591,436 - PS417_11895 0.62 -0.4
2,591,441 + PS417_11895 0.62 +0.0
2,591,441 + PS417_11895 0.62 +0.3
2,591,441 + PS417_11895 0.62 +0.1
2,591,442 - PS417_11895 0.62 +0.5
2,591,442 - PS417_11895 0.62 -0.0
2,591,442 - PS417_11895 0.62 -0.5
2,591,513 + PS417_11895 0.69 +0.9
2,591,514 - PS417_11895 0.69 -1.0
2,591,741 + +0.5
2,591,742 - +0.4
2,591,742 - -0.1
2,591,889 - +2.9
2,591,889 - +0.7
2,591,914 - +0.1
2,591,984 + -0.1
2,591,984 + -0.6
2,591,984 + +0.3
2,591,985 - -0.1
2,591,985 - +0.3
2,591,985 - -0.4
2,591,985 - +1.1
2,591,985 - -2.3
2,591,985 - +0.2
2,591,985 - +0.0
2,591,985 - +0.9
2,591,985 - -0.6
2,591,986 + +1.0
2,591,987 - -0.2
2,591,987 - +0.2
2,591,988 + -0.0
2,591,988 + +0.2
2,591,989 - -0.5
2,591,989 - -0.1
2,591,989 - -0.1
2,591,989 - +0.2
2,591,989 - +0.3
2,591,989 - +0.2
2,592,015 - +1.9
2,592,017 - +0.6
2,592,121 - +1.9
2,592,290 + +0.2
2,592,290 + -0.8
2,592,290 + -0.4
2,592,290 + +0.3
2,592,291 - +0.4
2,592,291 - +1.2
2,592,291 - +0.0
2,592,442 + PS417_11900 0.47 +0.9
2,592,511 + PS417_11900 0.64 +0.4
2,592,512 - PS417_11900 0.64 +0.3
2,592,596 + PS417_11900 0.85 +0.4
2,592,597 - PS417_11900 0.85 -0.2
2,592,741 - -0.4
2,592,775 + -0.2
2,592,775 + +0.6
2,592,960 - +0.2
2,593,079 + PS417_11905 0.15 +0.2
2,593,079 + PS417_11905 0.15 -0.3
2,593,080 - PS417_11905 0.15 -0.2
2,593,198 - PS417_11905 0.23 -0.2
2,593,653 + PS417_11905 0.51 +0.6

Or see this region's nucleotide sequence