Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11895 and PS417_11900 are separated by 423 nucleotides PS417_11900 and PS417_11905 are separated by 180 nucleotides
PS417_11895: PS417_11895 - Inositol transport system permease protein (from data) , at 2,590,805 to 2,591,827
_11895
PS417_11900: PS417_11900 - conjugal transfer protein TraR, at 2,592,251 to 2,592,655
_11900
PS417_11905: PS417_11905 - chemotaxis protein, at 2,592,836 to 2,594,431
_11905
Position (kb)
2592
2593 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2591.300 kb on + strand, within PS417_11895 at 2591.300 kb on + strand, within PS417_11895 at 2591.300 kb on + strand, within PS417_11895 at 2591.301 kb on - strand, within PS417_11895 at 2591.339 kb on + strand, within PS417_11895 at 2591.404 kb on + strand, within PS417_11895 at 2591.435 kb on + strand, within PS417_11895 at 2591.436 kb on - strand, within PS417_11895 at 2591.436 kb on - strand, within PS417_11895 at 2591.436 kb on - strand, within PS417_11895 at 2591.436 kb on - strand, within PS417_11895 at 2591.436 kb on - strand, within PS417_11895 at 2591.441 kb on + strand, within PS417_11895 at 2591.441 kb on + strand, within PS417_11895 at 2591.441 kb on + strand, within PS417_11895 at 2591.442 kb on - strand, within PS417_11895 at 2591.442 kb on - strand, within PS417_11895 at 2591.442 kb on - strand, within PS417_11895 at 2591.513 kb on + strand, within PS417_11895 at 2591.514 kb on - strand, within PS417_11895 at 2591.741 kb on + strand at 2591.742 kb on - strand at 2591.742 kb on - strand at 2591.889 kb on - strand at 2591.889 kb on - strand at 2591.914 kb on - strand at 2591.984 kb on + strand at 2591.984 kb on + strand at 2591.984 kb on + strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.985 kb on - strand at 2591.986 kb on + strand at 2591.987 kb on - strand at 2591.987 kb on - strand at 2591.988 kb on + strand at 2591.988 kb on + strand at 2591.989 kb on - strand at 2591.989 kb on - strand at 2591.989 kb on - strand at 2591.989 kb on - strand at 2591.989 kb on - strand at 2591.989 kb on - strand at 2592.015 kb on - strand at 2592.017 kb on - strand at 2592.121 kb on - strand at 2592.290 kb on + strand at 2592.290 kb on + strand at 2592.290 kb on + strand at 2592.290 kb on + strand at 2592.291 kb on - strand at 2592.291 kb on - strand at 2592.291 kb on - strand at 2592.442 kb on + strand, within PS417_11900 at 2592.511 kb on + strand, within PS417_11900 at 2592.512 kb on - strand, within PS417_11900 at 2592.596 kb on + strand, within PS417_11900 at 2592.597 kb on - strand, within PS417_11900 at 2592.741 kb on - strand at 2592.775 kb on + strand at 2592.775 kb on + strand at 2592.960 kb on - strand at 2593.079 kb on + strand, within PS417_11905 at 2593.079 kb on + strand, within PS417_11905 at 2593.080 kb on - strand, within PS417_11905 at 2593.198 kb on - strand, within PS417_11905 at 2593.653 kb on + strand, within PS417_11905
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 2,591,300 + PS417_11895 0.48 +1.9 2,591,300 + PS417_11895 0.48 -0.1 2,591,300 + PS417_11895 0.48 +0.0 2,591,301 - PS417_11895 0.48 +0.0 2,591,339 + PS417_11895 0.52 -0.2 2,591,404 + PS417_11895 0.59 +0.2 2,591,435 + PS417_11895 0.62 +0.1 2,591,436 - PS417_11895 0.62 +0.4 2,591,436 - PS417_11895 0.62 +0.7 2,591,436 - PS417_11895 0.62 -1.2 2,591,436 - PS417_11895 0.62 +0.0 2,591,436 - PS417_11895 0.62 -0.4 2,591,441 + PS417_11895 0.62 +0.0 2,591,441 + PS417_11895 0.62 +0.3 2,591,441 + PS417_11895 0.62 +0.1 2,591,442 - PS417_11895 0.62 +0.5 2,591,442 - PS417_11895 0.62 -0.0 2,591,442 - PS417_11895 0.62 -0.5 2,591,513 + PS417_11895 0.69 +0.9 2,591,514 - PS417_11895 0.69 -1.0 2,591,741 + +0.5 2,591,742 - +0.4 2,591,742 - -0.1 2,591,889 - +2.9 2,591,889 - +0.7 2,591,914 - +0.1 2,591,984 + -0.1 2,591,984 + -0.6 2,591,984 + +0.3 2,591,985 - -0.1 2,591,985 - +0.3 2,591,985 - -0.4 2,591,985 - +1.1 2,591,985 - -2.3 2,591,985 - +0.2 2,591,985 - +0.0 2,591,985 - +0.9 2,591,985 - -0.6 2,591,986 + +1.0 2,591,987 - -0.2 2,591,987 - +0.2 2,591,988 + -0.0 2,591,988 + +0.2 2,591,989 - -0.5 2,591,989 - -0.1 2,591,989 - -0.1 2,591,989 - +0.2 2,591,989 - +0.3 2,591,989 - +0.2 2,592,015 - +1.9 2,592,017 - +0.6 2,592,121 - +1.9 2,592,290 + +0.2 2,592,290 + -0.8 2,592,290 + -0.4 2,592,290 + +0.3 2,592,291 - +0.4 2,592,291 - +1.2 2,592,291 - +0.0 2,592,442 + PS417_11900 0.47 +0.9 2,592,511 + PS417_11900 0.64 +0.4 2,592,512 - PS417_11900 0.64 +0.3 2,592,596 + PS417_11900 0.85 +0.4 2,592,597 - PS417_11900 0.85 -0.2 2,592,741 - -0.4 2,592,775 + -0.2 2,592,775 + +0.6 2,592,960 - +0.2 2,593,079 + PS417_11905 0.15 +0.2 2,593,079 + PS417_11905 0.15 -0.3 2,593,080 - PS417_11905 0.15 -0.2 2,593,198 - PS417_11905 0.23 -0.2 2,593,653 + PS417_11905 0.51 +0.6
Or see this region's nucleotide sequence