Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10570 and PS417_10575 are separated by 148 nucleotides PS417_10575 and PS417_10580 are separated by 18 nucleotides
PS417_10570: PS417_10570 - cysteine protease, at 2,256,380 to 2,258,239
_10570
PS417_10575: PS417_10575 - DNA alkylation repair protein, at 2,258,388 to 2,259,488
_10575
PS417_10580: PS417_10580 - glutamine synthetase, at 2,259,507 to 2,260,853
_10580
Position (kb)
2258
2259
2260 Strain fitness (log2 ratio)
-1
0
1
2 at 2257.458 kb on - strand, within PS417_10570 at 2257.458 kb on - strand, within PS417_10570 at 2257.506 kb on + strand, within PS417_10570 at 2257.506 kb on + strand, within PS417_10570 at 2257.507 kb on - strand, within PS417_10570 at 2257.609 kb on - strand at 2257.609 kb on - strand, within PS417_10570 at 2257.617 kb on + strand, within PS417_10570 at 2257.670 kb on + strand, within PS417_10570 at 2257.670 kb on + strand, within PS417_10570 at 2257.670 kb on + strand, within PS417_10570 at 2257.671 kb on - strand, within PS417_10570 at 2257.830 kb on + strand at 2257.830 kb on + strand, within PS417_10570 at 2257.831 kb on - strand, within PS417_10570 at 2258.073 kb on + strand at 2258.074 kb on - strand at 2258.475 kb on - strand at 2258.495 kb on + strand at 2258.593 kb on + strand, within PS417_10575 at 2258.915 kb on - strand, within PS417_10575 at 2259.260 kb on - strand, within PS417_10575 at 2259.509 kb on - strand at 2260.039 kb on + strand, within PS417_10580 at 2260.039 kb on + strand, within PS417_10580 at 2260.040 kb on - strand, within PS417_10580 at 2260.084 kb on + strand at 2260.085 kb on - strand, within PS417_10580 at 2260.244 kb on + strand, within PS417_10580 at 2260.245 kb on - strand, within PS417_10580 at 2260.319 kb on + strand, within PS417_10580 at 2260.408 kb on + strand, within PS417_10580
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 2,257,458 - PS417_10570 0.58 -0.1 2,257,458 - PS417_10570 0.58 -0.3 2,257,506 + PS417_10570 0.61 +0.3 2,257,506 + PS417_10570 0.61 +1.8 2,257,507 - PS417_10570 0.61 +0.8 2,257,609 - -1.2 2,257,609 - PS417_10570 0.66 -0.6 2,257,617 + PS417_10570 0.67 +1.3 2,257,670 + PS417_10570 0.69 +0.0 2,257,670 + PS417_10570 0.69 -0.3 2,257,670 + PS417_10570 0.69 +0.7 2,257,671 - PS417_10570 0.69 -0.1 2,257,830 + -0.5 2,257,830 + PS417_10570 0.78 -1.2 2,257,831 - PS417_10570 0.78 -0.2 2,258,073 + -0.2 2,258,074 - -1.2 2,258,475 - -0.3 2,258,495 + -0.1 2,258,593 + PS417_10575 0.19 +0.3 2,258,915 - PS417_10575 0.48 +1.0 2,259,260 - PS417_10575 0.79 +0.5 2,259,509 - +1.0 2,260,039 + PS417_10580 0.39 +1.2 2,260,039 + PS417_10580 0.39 -0.7 2,260,040 - PS417_10580 0.40 -0.3 2,260,084 + -1.5 2,260,085 - PS417_10580 0.43 +0.9 2,260,244 + PS417_10580 0.55 -0.1 2,260,245 - PS417_10580 0.55 -0.1 2,260,319 + PS417_10580 0.60 +0.2 2,260,408 + PS417_10580 0.67 +0.1
Or see this region's nucleotide sequence