Strain Fitness in Pseudomonas simiae WCS417 around PS417_10575

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_10570 and PS417_10575 are separated by 148 nucleotidesPS417_10575 and PS417_10580 are separated by 18 nucleotides PS417_10570: PS417_10570 - cysteine protease, at 2,256,380 to 2,258,239 _10570 PS417_10575: PS417_10575 - DNA alkylation repair protein, at 2,258,388 to 2,259,488 _10575 PS417_10580: PS417_10580 - glutamine synthetase, at 2,259,507 to 2,260,853 _10580 Position (kb) 2258 2259 2260Strain fitness (log2 ratio) -1 0 1 2at 2257.458 kb on - strand, within PS417_10570at 2257.458 kb on - strand, within PS417_10570at 2257.506 kb on + strand, within PS417_10570at 2257.506 kb on + strand, within PS417_10570at 2257.507 kb on - strand, within PS417_10570at 2257.609 kb on - strandat 2257.609 kb on - strand, within PS417_10570at 2257.617 kb on + strand, within PS417_10570at 2257.670 kb on + strand, within PS417_10570at 2257.670 kb on + strand, within PS417_10570at 2257.670 kb on + strand, within PS417_10570at 2257.671 kb on - strand, within PS417_10570at 2257.830 kb on + strandat 2257.830 kb on + strand, within PS417_10570at 2257.831 kb on - strand, within PS417_10570at 2258.073 kb on + strandat 2258.074 kb on - strandat 2258.475 kb on - strandat 2258.495 kb on + strandat 2258.593 kb on + strand, within PS417_10575at 2258.915 kb on - strand, within PS417_10575at 2259.260 kb on - strand, within PS417_10575at 2259.509 kb on - strandat 2260.039 kb on + strand, within PS417_10580at 2260.039 kb on + strand, within PS417_10580at 2260.040 kb on - strand, within PS417_10580at 2260.084 kb on + strandat 2260.085 kb on - strand, within PS417_10580at 2260.244 kb on + strand, within PS417_10580at 2260.245 kb on - strand, within PS417_10580at 2260.319 kb on + strand, within PS417_10580at 2260.408 kb on + strand, within PS417_10580

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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2,257,458 - PS417_10570 0.58 -0.1
2,257,458 - PS417_10570 0.58 -0.3
2,257,506 + PS417_10570 0.61 +0.3
2,257,506 + PS417_10570 0.61 +1.8
2,257,507 - PS417_10570 0.61 +0.8
2,257,609 - -1.2
2,257,609 - PS417_10570 0.66 -0.6
2,257,617 + PS417_10570 0.67 +1.3
2,257,670 + PS417_10570 0.69 +0.0
2,257,670 + PS417_10570 0.69 -0.3
2,257,670 + PS417_10570 0.69 +0.7
2,257,671 - PS417_10570 0.69 -0.1
2,257,830 + -0.5
2,257,830 + PS417_10570 0.78 -1.2
2,257,831 - PS417_10570 0.78 -0.2
2,258,073 + -0.2
2,258,074 - -1.2
2,258,475 - -0.3
2,258,495 + -0.1
2,258,593 + PS417_10575 0.19 +0.3
2,258,915 - PS417_10575 0.48 +1.0
2,259,260 - PS417_10575 0.79 +0.5
2,259,509 - +1.0
2,260,039 + PS417_10580 0.39 +1.2
2,260,039 + PS417_10580 0.39 -0.7
2,260,040 - PS417_10580 0.40 -0.3
2,260,084 + -1.5
2,260,085 - PS417_10580 0.43 +0.9
2,260,244 + PS417_10580 0.55 -0.1
2,260,245 - PS417_10580 0.55 -0.1
2,260,319 + PS417_10580 0.60 +0.2
2,260,408 + PS417_10580 0.67 +0.1

Or see this region's nucleotide sequence