Strain Fitness in Pseudomonas simiae WCS417 around PS417_06900

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06890 and PS417_06895 are separated by 105 nucleotidesPS417_06895 and PS417_06900 are separated by 139 nucleotidesPS417_06900 and PS417_06905 are separated by 123 nucleotides PS417_06890: PS417_06890 - aldolase, at 1,525,339 to 1,526,121 _06890 PS417_06895: PS417_06895 - DNA-binding protein, at 1,526,227 to 1,526,754 _06895 PS417_06900: PS417_06900 - hypothetical protein, at 1,526,894 to 1,527,910 _06900 PS417_06905: PS417_06905 - alcohol dehydrogenase, at 1,528,034 to 1,529,182 _06905 Position (kb) 1526 1527 1528Strain fitness (log2 ratio) -2 -1 0 1 2at 1525.925 kb on + strand, within PS417_06890at 1525.926 kb on - strand, within PS417_06890at 1525.928 kb on + strand, within PS417_06890at 1525.929 kb on - strand, within PS417_06890at 1525.929 kb on - strand, within PS417_06890at 1526.040 kb on + strand, within PS417_06890at 1526.040 kb on + strand, within PS417_06890at 1526.041 kb on - strand, within PS417_06890at 1526.041 kb on - strandat 1526.108 kb on - strandat 1526.268 kb on + strandat 1526.311 kb on + strand, within PS417_06895at 1526.311 kb on + strand, within PS417_06895at 1526.312 kb on - strand, within PS417_06895at 1526.312 kb on - strand, within PS417_06895at 1526.435 kb on - strand, within PS417_06895at 1526.533 kb on + strand, within PS417_06895at 1526.534 kb on - strand, within PS417_06895at 1527.095 kb on - strand, within PS417_06900at 1527.159 kb on + strand, within PS417_06900at 1527.174 kb on + strand, within PS417_06900at 1527.376 kb on + strand, within PS417_06900at 1527.462 kb on + strand, within PS417_06900at 1527.478 kb on - strand, within PS417_06900at 1527.478 kb on - strand, within PS417_06900at 1527.501 kb on + strand, within PS417_06900at 1527.502 kb on - strand, within PS417_06900at 1527.581 kb on - strand, within PS417_06900at 1527.581 kb on - strand, within PS417_06900at 1527.787 kb on - strand, within PS417_06900at 1528.012 kb on - strandat 1528.012 kb on - strandat 1528.012 kb on - strandat 1528.115 kb on + strandat 1528.115 kb on + strandat 1528.223 kb on + strand, within PS417_06905at 1528.223 kb on + strand, within PS417_06905at 1528.224 kb on - strand, within PS417_06905at 1528.637 kb on + strand, within PS417_06905at 1528.637 kb on + strand, within PS417_06905at 1528.637 kb on + strand, within PS417_06905at 1528.638 kb on - strand, within PS417_06905at 1528.638 kb on - strand, within PS417_06905

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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1,525,925 + PS417_06890 0.75 -0.8
1,525,926 - PS417_06890 0.75 -0.0
1,525,928 + PS417_06890 0.75 +1.8
1,525,929 - PS417_06890 0.75 +0.8
1,525,929 - PS417_06890 0.75 +0.8
1,526,040 + PS417_06890 0.90 -1.2
1,526,040 + PS417_06890 0.90 +1.2
1,526,041 - PS417_06890 0.90 +0.4
1,526,041 - +2.4
1,526,108 - +0.4
1,526,268 + -0.3
1,526,311 + PS417_06895 0.16 +0.1
1,526,311 + PS417_06895 0.16 -0.6
1,526,312 - PS417_06895 0.16 -1.0
1,526,312 - PS417_06895 0.16 -1.6
1,526,435 - PS417_06895 0.39 -0.5
1,526,533 + PS417_06895 0.58 -0.6
1,526,534 - PS417_06895 0.58 -1.6
1,527,095 - PS417_06900 0.20 -0.0
1,527,159 + PS417_06900 0.26 +1.0
1,527,174 + PS417_06900 0.28 +0.8
1,527,376 + PS417_06900 0.47 +0.6
1,527,462 + PS417_06900 0.56 +0.1
1,527,478 - PS417_06900 0.57 +0.4
1,527,478 - PS417_06900 0.57 +0.5
1,527,501 + PS417_06900 0.60 +0.4
1,527,502 - PS417_06900 0.60 -0.2
1,527,581 - PS417_06900 0.68 +0.5
1,527,581 - PS417_06900 0.68 -0.4
1,527,787 - PS417_06900 0.88 +0.4
1,528,012 - -0.9
1,528,012 - -1.1
1,528,012 - +2.6
1,528,115 + -0.1
1,528,115 + +0.1
1,528,223 + PS417_06905 0.16 -0.5
1,528,223 + PS417_06905 0.16 +1.1
1,528,224 - PS417_06905 0.17 -0.3
1,528,637 + PS417_06905 0.52 -1.0
1,528,637 + PS417_06905 0.52 +0.3
1,528,637 + PS417_06905 0.52 -2.4
1,528,638 - PS417_06905 0.53 +0.9
1,528,638 - PS417_06905 0.53 +0.3

Or see this region's nucleotide sequence