Strain Fitness in Pseudomonas simiae WCS417 around PS417_06635

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06630 and PS417_06635 are separated by 140 nucleotidesPS417_06635 and PS417_06640 are separated by 251 nucleotides PS417_06630: PS417_06630 - diguanylate phosphodiesterase, at 1,468,176 to 1,470,440 _06630 PS417_06635: PS417_06635 - ferredoxin, at 1,470,581 to 1,470,946 _06635 PS417_06640: PS417_06640 - MFS transporter, at 1,471,198 to 1,472,544 _06640 Position (kb) 1470 1471Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1469.858 kb on - strand, within PS417_06630at 1469.977 kb on + strand, within PS417_06630at 1469.977 kb on + strand, within PS417_06630at 1469.977 kb on + strand, within PS417_06630at 1470.016 kb on + strand, within PS417_06630at 1470.016 kb on + strandat 1470.017 kb on - strand, within PS417_06630at 1470.017 kb on - strand, within PS417_06630at 1470.017 kb on - strand, within PS417_06630at 1470.064 kb on + strand, within PS417_06630at 1470.064 kb on + strand, within PS417_06630at 1470.064 kb on + strand, within PS417_06630at 1470.064 kb on + strand, within PS417_06630at 1470.064 kb on + strand, within PS417_06630at 1470.065 kb on - strand, within PS417_06630at 1470.343 kb on + strandat 1470.387 kb on + strandat 1470.387 kb on + strandat 1470.387 kb on + strandat 1470.387 kb on + strandat 1470.387 kb on + strandat 1470.388 kb on - strandat 1470.440 kb on + strandat 1470.440 kb on + strandat 1470.441 kb on - strandat 1470.441 kb on - strandat 1470.455 kb on + strandat 1470.500 kb on + strandat 1470.582 kb on + strandat 1470.583 kb on - strandat 1470.583 kb on - strandat 1470.726 kb on + strandat 1470.726 kb on + strand, within PS417_06635at 1470.727 kb on - strand, within PS417_06635at 1471.001 kb on + strandat 1471.001 kb on + strandat 1471.039 kb on + strandat 1471.041 kb on + strandat 1471.041 kb on + strandat 1471.041 kb on + strandat 1471.087 kb on - strandat 1471.130 kb on + strandat 1471.130 kb on + strandat 1471.130 kb on + strandat 1471.131 kb on - strandat 1471.131 kb on - strandat 1471.182 kb on + strandat 1471.182 kb on + strandat 1471.183 kb on - strandat 1471.546 kb on + strand, within PS417_06640at 1471.660 kb on - strand, within PS417_06640at 1471.710 kb on + strand, within PS417_06640at 1471.753 kb on + strand, within PS417_06640at 1471.753 kb on + strand, within PS417_06640at 1471.753 kb on + strand, within PS417_06640at 1471.754 kb on - strand, within PS417_06640at 1471.894 kb on + strand, within PS417_06640at 1471.895 kb on - strand, within PS417_06640at 1471.933 kb on + strand, within PS417_06640at 1471.934 kb on - strand, within PS417_06640

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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1,469,858 - PS417_06630 0.74 +1.4
1,469,977 + PS417_06630 0.80 -0.4
1,469,977 + PS417_06630 0.80 +0.7
1,469,977 + PS417_06630 0.80 +0.2
1,470,016 + PS417_06630 0.81 +0.2
1,470,016 + +2.8
1,470,017 - PS417_06630 0.81 -0.1
1,470,017 - PS417_06630 0.81 -0.4
1,470,017 - PS417_06630 0.81 +2.0
1,470,064 + PS417_06630 0.83 +0.4
1,470,064 + PS417_06630 0.83 -0.1
1,470,064 + PS417_06630 0.83 -0.2
1,470,064 + PS417_06630 0.83 -0.2
1,470,064 + PS417_06630 0.83 -1.6
1,470,065 - PS417_06630 0.83 +1.4
1,470,343 + +0.7
1,470,387 + +1.0
1,470,387 + -0.1
1,470,387 + +0.0
1,470,387 + +0.1
1,470,387 + +0.2
1,470,388 - -0.1
1,470,440 + +0.5
1,470,440 + +0.0
1,470,441 - -2.4
1,470,441 - +2.4
1,470,455 + +0.4
1,470,500 + +0.2
1,470,582 + -0.5
1,470,583 - +0.1
1,470,583 - +1.2
1,470,726 + +0.2
1,470,726 + PS417_06635 0.40 +0.4
1,470,727 - PS417_06635 0.40 +0.6
1,471,001 + +0.1
1,471,001 + +0.7
1,471,039 + -1.3
1,471,041 + -0.8
1,471,041 + +0.2
1,471,041 + +1.1
1,471,087 - +0.5
1,471,130 + -0.7
1,471,130 + +0.2
1,471,130 + -0.1
1,471,131 - -0.5
1,471,131 - +0.8
1,471,182 + +0.8
1,471,182 + -0.5
1,471,183 - -0.9
1,471,546 + PS417_06640 0.26 +0.0
1,471,660 - PS417_06640 0.34 +0.4
1,471,710 + PS417_06640 0.38 +0.5
1,471,753 + PS417_06640 0.41 +0.2
1,471,753 + PS417_06640 0.41 -0.4
1,471,753 + PS417_06640 0.41 -0.0
1,471,754 - PS417_06640 0.41 +1.0
1,471,894 + PS417_06640 0.52 +0.1
1,471,895 - PS417_06640 0.52 -0.6
1,471,933 + PS417_06640 0.55 -0.1
1,471,934 - PS417_06640 0.55 +0.2

Or see this region's nucleotide sequence