Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06630 and PS417_06635 are separated by 140 nucleotides PS417_06635 and PS417_06640 are separated by 251 nucleotides
PS417_06630: PS417_06630 - diguanylate phosphodiesterase, at 1,468,176 to 1,470,440
_06630
PS417_06635: PS417_06635 - ferredoxin, at 1,470,581 to 1,470,946
_06635
PS417_06640: PS417_06640 - MFS transporter, at 1,471,198 to 1,472,544
_06640
Position (kb)
1470
1471 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1469.858 kb on - strand, within PS417_06630 at 1469.977 kb on + strand, within PS417_06630 at 1469.977 kb on + strand, within PS417_06630 at 1469.977 kb on + strand, within PS417_06630 at 1470.016 kb on + strand, within PS417_06630 at 1470.016 kb on + strand at 1470.017 kb on - strand, within PS417_06630 at 1470.017 kb on - strand, within PS417_06630 at 1470.017 kb on - strand, within PS417_06630 at 1470.064 kb on + strand, within PS417_06630 at 1470.064 kb on + strand, within PS417_06630 at 1470.064 kb on + strand, within PS417_06630 at 1470.064 kb on + strand, within PS417_06630 at 1470.064 kb on + strand, within PS417_06630 at 1470.065 kb on - strand, within PS417_06630 at 1470.343 kb on + strand at 1470.387 kb on + strand at 1470.387 kb on + strand at 1470.387 kb on + strand at 1470.387 kb on + strand at 1470.387 kb on + strand at 1470.388 kb on - strand at 1470.440 kb on + strand at 1470.440 kb on + strand at 1470.441 kb on - strand at 1470.441 kb on - strand at 1470.455 kb on + strand at 1470.500 kb on + strand at 1470.582 kb on + strand at 1470.583 kb on - strand at 1470.583 kb on - strand at 1470.726 kb on + strand at 1470.726 kb on + strand, within PS417_06635 at 1470.727 kb on - strand, within PS417_06635 at 1471.001 kb on + strand at 1471.001 kb on + strand at 1471.039 kb on + strand at 1471.041 kb on + strand at 1471.041 kb on + strand at 1471.041 kb on + strand at 1471.087 kb on - strand at 1471.130 kb on + strand at 1471.130 kb on + strand at 1471.130 kb on + strand at 1471.131 kb on - strand at 1471.131 kb on - strand at 1471.182 kb on + strand at 1471.182 kb on + strand at 1471.183 kb on - strand at 1471.546 kb on + strand, within PS417_06640 at 1471.660 kb on - strand, within PS417_06640 at 1471.710 kb on + strand, within PS417_06640 at 1471.753 kb on + strand, within PS417_06640 at 1471.753 kb on + strand, within PS417_06640 at 1471.753 kb on + strand, within PS417_06640 at 1471.754 kb on - strand, within PS417_06640 at 1471.894 kb on + strand, within PS417_06640 at 1471.895 kb on - strand, within PS417_06640 at 1471.933 kb on + strand, within PS417_06640 at 1471.934 kb on - strand, within PS417_06640
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 1,469,858 - PS417_06630 0.74 +1.4 1,469,977 + PS417_06630 0.80 -0.4 1,469,977 + PS417_06630 0.80 +0.7 1,469,977 + PS417_06630 0.80 +0.2 1,470,016 + PS417_06630 0.81 +0.2 1,470,016 + +2.8 1,470,017 - PS417_06630 0.81 -0.1 1,470,017 - PS417_06630 0.81 -0.4 1,470,017 - PS417_06630 0.81 +2.0 1,470,064 + PS417_06630 0.83 +0.4 1,470,064 + PS417_06630 0.83 -0.1 1,470,064 + PS417_06630 0.83 -0.2 1,470,064 + PS417_06630 0.83 -0.2 1,470,064 + PS417_06630 0.83 -1.6 1,470,065 - PS417_06630 0.83 +1.4 1,470,343 + +0.7 1,470,387 + +1.0 1,470,387 + -0.1 1,470,387 + +0.0 1,470,387 + +0.1 1,470,387 + +0.2 1,470,388 - -0.1 1,470,440 + +0.5 1,470,440 + +0.0 1,470,441 - -2.4 1,470,441 - +2.4 1,470,455 + +0.4 1,470,500 + +0.2 1,470,582 + -0.5 1,470,583 - +0.1 1,470,583 - +1.2 1,470,726 + +0.2 1,470,726 + PS417_06635 0.40 +0.4 1,470,727 - PS417_06635 0.40 +0.6 1,471,001 + +0.1 1,471,001 + +0.7 1,471,039 + -1.3 1,471,041 + -0.8 1,471,041 + +0.2 1,471,041 + +1.1 1,471,087 - +0.5 1,471,130 + -0.7 1,471,130 + +0.2 1,471,130 + -0.1 1,471,131 - -0.5 1,471,131 - +0.8 1,471,182 + +0.8 1,471,182 + -0.5 1,471,183 - -0.9 1,471,546 + PS417_06640 0.26 +0.0 1,471,660 - PS417_06640 0.34 +0.4 1,471,710 + PS417_06640 0.38 +0.5 1,471,753 + PS417_06640 0.41 +0.2 1,471,753 + PS417_06640 0.41 -0.4 1,471,753 + PS417_06640 0.41 -0.0 1,471,754 - PS417_06640 0.41 +1.0 1,471,894 + PS417_06640 0.52 +0.1 1,471,895 - PS417_06640 0.52 -0.6 1,471,933 + PS417_06640 0.55 -0.1 1,471,934 - PS417_06640 0.55 +0.2
Or see this region's nucleotide sequence