Strain Fitness in Pseudomonas simiae WCS417 around PS417_05650

Experiment: RCH2_defined_glucose with MS_media 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05645 and PS417_05650 are separated by 84 nucleotidesPS417_05650 and PS417_05655 are separated by 107 nucleotidesPS417_05655 and PS417_05660 are separated by 65 nucleotides PS417_05645: PS417_05645 - LuxR family transcriptional regulator, at 1,269,663 to 1,270,295 _05645 PS417_05650: PS417_05650 - leucyl-tRNA synthetase, at 1,270,380 to 1,270,562 _05650 PS417_05655: PS417_05655 - endonuclease III, at 1,270,670 to 1,271,308 _05655 PS417_05660: PS417_05660 - (4Fe-4S)-binding protein, at 1,271,374 to 1,272,327 _05660 Position (kb) 1270 1271Strain fitness (log2 ratio) -2 -1 0 1 2at 1269.436 kb on + strandat 1269.436 kb on + strandat 1269.437 kb on - strandat 1269.437 kb on - strandat 1269.437 kb on - strandat 1269.465 kb on + strandat 1269.465 kb on + strandat 1269.466 kb on - strandat 1269.543 kb on + strandat 1269.611 kb on + strandat 1269.635 kb on - strandat 1269.716 kb on + strandat 1269.815 kb on - strand, within PS417_05645at 1269.854 kb on + strand, within PS417_05645at 1269.854 kb on + strand, within PS417_05645at 1269.873 kb on - strand, within PS417_05645at 1270.035 kb on + strand, within PS417_05645at 1270.035 kb on + strand, within PS417_05645at 1270.036 kb on - strand, within PS417_05645at 1270.036 kb on - strand, within PS417_05645at 1270.133 kb on - strand, within PS417_05645at 1270.197 kb on - strand, within PS417_05645at 1270.212 kb on + strand, within PS417_05645at 1270.213 kb on - strand, within PS417_05645at 1270.213 kb on - strand, within PS417_05645at 1270.292 kb on - strandat 1270.294 kb on - strandat 1270.294 kb on - strandat 1270.308 kb on + strandat 1270.308 kb on + strandat 1270.309 kb on - strandat 1270.309 kb on - strandat 1270.309 kb on - strandat 1270.309 kb on - strandat 1270.309 kb on - strandat 1270.445 kb on + strand, within PS417_05650at 1270.445 kb on + strand, within PS417_05650at 1270.500 kb on + strand, within PS417_05650at 1270.500 kb on + strand, within PS417_05650at 1270.501 kb on - strandat 1270.501 kb on - strand, within PS417_05650at 1270.562 kb on + strandat 1270.562 kb on + strandat 1270.562 kb on + strandat 1270.563 kb on - strandat 1270.580 kb on - strandat 1270.601 kb on + strandat 1270.602 kb on - strandat 1270.604 kb on - strandat 1270.604 kb on - strandat 1270.755 kb on + strand, within PS417_05655at 1270.755 kb on + strand, within PS417_05655at 1270.756 kb on - strandat 1270.889 kb on - strand, within PS417_05655at 1270.889 kb on - strand, within PS417_05655at 1271.065 kb on - strand, within PS417_05655at 1271.086 kb on - strand, within PS417_05655at 1271.115 kb on + strand, within PS417_05655at 1271.115 kb on + strand, within PS417_05655at 1271.115 kb on + strand, within PS417_05655at 1271.115 kb on + strandat 1271.347 kb on - strandat 1271.347 kb on - strandat 1271.416 kb on + strandat 1271.416 kb on + strandat 1271.417 kb on - strandat 1271.417 kb on - strandat 1271.529 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x
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1,269,436 + +0.4
1,269,436 + +1.4
1,269,437 - -0.5
1,269,437 - +0.3
1,269,437 - +0.3
1,269,465 + +0.8
1,269,465 + -0.1
1,269,466 - +1.1
1,269,543 + -0.2
1,269,611 + +0.3
1,269,635 - -0.1
1,269,716 + +0.1
1,269,815 - PS417_05645 0.24 -0.3
1,269,854 + PS417_05645 0.30 -0.2
1,269,854 + PS417_05645 0.30 +0.4
1,269,873 - PS417_05645 0.33 +0.0
1,270,035 + PS417_05645 0.59 +0.0
1,270,035 + PS417_05645 0.59 -0.4
1,270,036 - PS417_05645 0.59 +2.4
1,270,036 - PS417_05645 0.59 -0.2
1,270,133 - PS417_05645 0.74 +0.0
1,270,197 - PS417_05645 0.84 +1.0
1,270,212 + PS417_05645 0.87 -1.2
1,270,213 - PS417_05645 0.87 +0.3
1,270,213 - PS417_05645 0.87 +0.0
1,270,292 - +0.6
1,270,294 - -1.2
1,270,294 - +0.4
1,270,308 + +0.8
1,270,308 + +2.2
1,270,309 - +0.3
1,270,309 - -0.4
1,270,309 - -0.7
1,270,309 - +0.5
1,270,309 - -0.1
1,270,445 + PS417_05650 0.36 +0.6
1,270,445 + PS417_05650 0.36 -0.9
1,270,500 + PS417_05650 0.66 +1.5
1,270,500 + PS417_05650 0.66 +0.6
1,270,501 - -1.2
1,270,501 - PS417_05650 0.66 -0.2
1,270,562 + -0.3
1,270,562 + -0.2
1,270,562 + -0.1
1,270,563 - -0.4
1,270,580 - -1.1
1,270,601 + -0.1
1,270,602 - -0.1
1,270,604 - +0.9
1,270,604 - +0.1
1,270,755 + PS417_05655 0.13 -0.1
1,270,755 + PS417_05655 0.13 +0.0
1,270,756 - +0.8
1,270,889 - PS417_05655 0.34 +0.8
1,270,889 - PS417_05655 0.34 -0.2
1,271,065 - PS417_05655 0.62 -0.6
1,271,086 - PS417_05655 0.65 +1.8
1,271,115 + PS417_05655 0.70 -0.4
1,271,115 + PS417_05655 0.70 -1.5
1,271,115 + PS417_05655 0.70 +0.4
1,271,115 + +1.8
1,271,347 - +0.8
1,271,347 - -0.2
1,271,416 + -1.8
1,271,416 + -0.1
1,271,417 - +1.4
1,271,417 - +0.1
1,271,529 + +0.4

Or see this region's nucleotide sequence