Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05645 and PS417_05650 are separated by 84 nucleotides PS417_05650 and PS417_05655 are separated by 107 nucleotides PS417_05655 and PS417_05660 are separated by 65 nucleotides
PS417_05645: PS417_05645 - LuxR family transcriptional regulator, at 1,269,663 to 1,270,295
_05645
PS417_05650: PS417_05650 - leucyl-tRNA synthetase, at 1,270,380 to 1,270,562
_05650
PS417_05655: PS417_05655 - endonuclease III, at 1,270,670 to 1,271,308
_05655
PS417_05660: PS417_05660 - (4Fe-4S)-binding protein, at 1,271,374 to 1,272,327
_05660
Position (kb)
1270
1271 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1269.436 kb on + strand at 1269.436 kb on + strand at 1269.437 kb on - strand at 1269.437 kb on - strand at 1269.437 kb on - strand at 1269.465 kb on + strand at 1269.465 kb on + strand at 1269.466 kb on - strand at 1269.543 kb on + strand at 1269.611 kb on + strand at 1269.635 kb on - strand at 1269.716 kb on + strand at 1269.815 kb on - strand, within PS417_05645 at 1269.854 kb on + strand, within PS417_05645 at 1269.854 kb on + strand, within PS417_05645 at 1269.873 kb on - strand, within PS417_05645 at 1270.035 kb on + strand, within PS417_05645 at 1270.035 kb on + strand, within PS417_05645 at 1270.036 kb on - strand, within PS417_05645 at 1270.036 kb on - strand, within PS417_05645 at 1270.133 kb on - strand, within PS417_05645 at 1270.197 kb on - strand, within PS417_05645 at 1270.212 kb on + strand, within PS417_05645 at 1270.213 kb on - strand, within PS417_05645 at 1270.213 kb on - strand, within PS417_05645 at 1270.292 kb on - strand at 1270.294 kb on - strand at 1270.294 kb on - strand at 1270.308 kb on + strand at 1270.308 kb on + strand at 1270.309 kb on - strand at 1270.309 kb on - strand at 1270.309 kb on - strand at 1270.309 kb on - strand at 1270.309 kb on - strand at 1270.445 kb on + strand, within PS417_05650 at 1270.445 kb on + strand, within PS417_05650 at 1270.500 kb on + strand, within PS417_05650 at 1270.500 kb on + strand, within PS417_05650 at 1270.501 kb on - strand at 1270.501 kb on - strand, within PS417_05650 at 1270.562 kb on + strand at 1270.562 kb on + strand at 1270.562 kb on + strand at 1270.563 kb on - strand at 1270.580 kb on - strand at 1270.601 kb on + strand at 1270.602 kb on - strand at 1270.604 kb on - strand at 1270.604 kb on - strand at 1270.755 kb on + strand, within PS417_05655 at 1270.755 kb on + strand, within PS417_05655 at 1270.756 kb on - strand at 1270.889 kb on - strand, within PS417_05655 at 1270.889 kb on - strand, within PS417_05655 at 1271.065 kb on - strand, within PS417_05655 at 1271.086 kb on - strand, within PS417_05655 at 1271.115 kb on + strand, within PS417_05655 at 1271.115 kb on + strand, within PS417_05655 at 1271.115 kb on + strand, within PS417_05655 at 1271.115 kb on + strand at 1271.347 kb on - strand at 1271.347 kb on - strand at 1271.416 kb on + strand at 1271.416 kb on + strand at 1271.417 kb on - strand at 1271.417 kb on - strand at 1271.529 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 1,269,436 + +0.4 1,269,436 + +1.4 1,269,437 - -0.5 1,269,437 - +0.3 1,269,437 - +0.3 1,269,465 + +0.8 1,269,465 + -0.1 1,269,466 - +1.1 1,269,543 + -0.2 1,269,611 + +0.3 1,269,635 - -0.1 1,269,716 + +0.1 1,269,815 - PS417_05645 0.24 -0.3 1,269,854 + PS417_05645 0.30 -0.2 1,269,854 + PS417_05645 0.30 +0.4 1,269,873 - PS417_05645 0.33 +0.0 1,270,035 + PS417_05645 0.59 +0.0 1,270,035 + PS417_05645 0.59 -0.4 1,270,036 - PS417_05645 0.59 +2.4 1,270,036 - PS417_05645 0.59 -0.2 1,270,133 - PS417_05645 0.74 +0.0 1,270,197 - PS417_05645 0.84 +1.0 1,270,212 + PS417_05645 0.87 -1.2 1,270,213 - PS417_05645 0.87 +0.3 1,270,213 - PS417_05645 0.87 +0.0 1,270,292 - +0.6 1,270,294 - -1.2 1,270,294 - +0.4 1,270,308 + +0.8 1,270,308 + +2.2 1,270,309 - +0.3 1,270,309 - -0.4 1,270,309 - -0.7 1,270,309 - +0.5 1,270,309 - -0.1 1,270,445 + PS417_05650 0.36 +0.6 1,270,445 + PS417_05650 0.36 -0.9 1,270,500 + PS417_05650 0.66 +1.5 1,270,500 + PS417_05650 0.66 +0.6 1,270,501 - -1.2 1,270,501 - PS417_05650 0.66 -0.2 1,270,562 + -0.3 1,270,562 + -0.2 1,270,562 + -0.1 1,270,563 - -0.4 1,270,580 - -1.1 1,270,601 + -0.1 1,270,602 - -0.1 1,270,604 - +0.9 1,270,604 - +0.1 1,270,755 + PS417_05655 0.13 -0.1 1,270,755 + PS417_05655 0.13 +0.0 1,270,756 - +0.8 1,270,889 - PS417_05655 0.34 +0.8 1,270,889 - PS417_05655 0.34 -0.2 1,271,065 - PS417_05655 0.62 -0.6 1,271,086 - PS417_05655 0.65 +1.8 1,271,115 + PS417_05655 0.70 -0.4 1,271,115 + PS417_05655 0.70 -1.5 1,271,115 + PS417_05655 0.70 +0.4 1,271,115 + +1.8 1,271,347 - +0.8 1,271,347 - -0.2 1,271,416 + -1.8 1,271,416 + -0.1 1,271,417 - +1.4 1,271,417 - +0.1 1,271,529 + +0.4
Or see this region's nucleotide sequence