Strain Fitness in Pseudomonas simiae WCS417 around PS417_09890

Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x
2,138,797	-		PS417_09880	0.50	-0.2
2,138,797	-				+0.7
2,138,959	+				-0.9
2,138,960	-				+0.9
2,138,978	+				-0.2
2,139,009	-				-0.2
2,139,015	-				-0.7
2,139,067	+				+0.4
2,139,068	-				+0.7
2,139,110	+		PS417_09885	0.17	+0.1
2,139,157	+		PS417_09885	0.25	+0.7
2,139,157	+		PS417_09885	0.25	-1.3
2,139,157	+		PS417_09885	0.25	+0.3
2,139,158	-		PS417_09885	0.26	+0.7
2,139,244	+		PS417_09885	0.41	+0.2
2,139,261	-		PS417_09885	0.44	-0.5
2,139,317	-		PS417_09885	0.54	-2.0
2,139,383	+		PS417_09885	0.66	+0.0
2,139,546	-				+0.3
2,139,546	-				+0.3
2,139,546	-				+0.1
2,139,546	-				-0.1
2,139,570	+				+0.2
2,139,570	+				-0.0
2,139,570	+				-0.5
2,139,605	-				-0.9
2,139,609	+				-0.9
2,139,609	+				-0.9
2,139,609	+				+1.5
2,139,712	+				-0.6
2,139,712	+				+1.3
2,139,782	+				+0.3
2,139,782	+				-0.2
2,139,783	-				+0.4
2,139,783	-				-0.0
2,139,783	-				-0.7
2,139,834	+		PS417_09890	0.23	-0.7
2,139,834	+		PS417_09890	0.23	+2.0
2,139,835	-		PS417_09890	0.23	-1.0
2,139,835	-		PS417_09890	0.23	-1.2
2,139,835	-		PS417_09890	0.23	-0.6
2,139,835	-		PS417_09890	0.23	-0.9
2,139,838	+		PS417_09890	0.24	-0.6
2,139,868	+		PS417_09890	0.37	-2.1
2,139,911	+		PS417_09890	0.56	-0.7
2,139,911	+		PS417_09890	0.56	-1.3
2,139,912	-		PS417_09890	0.56	-0.2
2,139,912	-		PS417_09890	0.56	-0.3
2,139,912	-		PS417_09890	0.56	+0.2
2,139,915	+		PS417_09890	0.57	-1.1
2,139,916	-		PS417_09890	0.58	-1.4
2,139,916	-		PS417_09890	0.58	+2.2
2,139,946	+		PS417_09890	0.71	-0.2
2,139,946	+		PS417_09890	0.71	-0.3
2,139,976	+		PS417_09890	0.83	-0.2
2,140,094	-				-0.2
2,140,151	-				+1.0
2,140,224	+		PS417_09895	0.28	+0.0
2,140,224	+		PS417_09895	0.28	+1.9
2,140,465	+				+0.1
2,140,465	+				-0.4
2,140,466	-				+0.7
2,140,531	+				+1.1
2,140,771	+		PS417_09900	0.41	-0.3
2,140,772	-		PS417_09900	0.41	+0.2
2,140,772	-		PS417_09900	0.41	-0.6
2,140,775	+		PS417_09900	0.41	-0.3
2,140,789	+		PS417_09900	0.44	-0.6
2,140,789	+		PS417_09900	0.44	-1.7
2,140,790	-		PS417_09900	0.44	-1.7
2,140,860	+		PS417_09900	0.56	+0.0
2,140,860	+		PS417_09900	0.56	-0.4
2,140,861	-		PS417_09900	0.56	-0.2
2,140,861	-		PS417_09900	0.56	-0.5
2,140,981	+		PS417_09900	0.76	-0.5
2,140,981	+		PS417_09900	0.76	-0.7
2,140,981	+		PS417_09900	0.76	+0.5
2,140,982	-				+1.1