Experiment: KB with 4-hydroxychalcone 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4141 and Psyr_4142 are separated by 304 nucleotides Psyr_4142 and Psyr_4143 are separated by 29 nucleotides Psyr_4143 and Psyr_4144 are separated by 8 nucleotides
Psyr_4141: Psyr_4141 - ABC transporter, at 4,929,925 to 4,930,734
_4141
Psyr_4142: Psyr_4142 - KpsF/GutQ, at 4,931,039 to 4,932,013
_4142
Psyr_4143: Psyr_4143 - HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI, at 4,932,043 to 4,932,552
_4143
Psyr_4144: Psyr_4144 - Protein of unknown function DUF1239, at 4,932,561 to 4,933,133
_4144
Position (kb) 4931
4932
4933 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4930.088 kb on + strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.232 kb on + strand, within Psyr_4141 at 4930.232 kb on + strand, within Psyr_4141 at 4930.232 kb on + strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.233 kb on - strand, within Psyr_4141 at 4930.444 kb on - strand, within Psyr_4141 at 4930.510 kb on + strand, within Psyr_4141 at 4930.715 kb on + strand at 4930.736 kb on + strand at 4930.736 kb on + strand at 4930.737 kb on - strand at 4930.737 kb on - strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.823 kb on + strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.824 kb on - strand at 4930.825 kb on + strand at 4930.825 kb on + strand at 4930.826 kb on - strand at 4930.826 kb on - strand at 4930.920 kb on + strand at 4930.934 kb on + strand at 4930.934 kb on + strand at 4930.935 kb on - strand at 4930.938 kb on + strand at 4930.939 kb on - strand at 4930.939 kb on - strand at 4932.011 kb on + strand at 4932.011 kb on + strand at 4932.011 kb on + strand at 4932.026 kb on + strand at 4932.112 kb on + strand, within Psyr_4143 at 4932.431 kb on + strand, within Psyr_4143 at 4932.431 kb on + strand, within Psyr_4143 at 4932.544 kb on + strand at 4932.548 kb on + strand at 4932.548 kb on + strand at 4932.548 kb on + strand at 4932.548 kb on + strand at 4932.548 kb on + strand at 4932.548 kb on + strand at 4932.550 kb on + strand at 4932.550 kb on + strand at 4932.550 kb on + strand at 4932.550 kb on + strand at 4932.550 kb on + strand at 4932.560 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with 4-hydroxychalcone 10 mM remove 4,930,088 + Psyr_4141 0.20 -0.2 4,930,088 + Psyr_4141 0.20 +0.2 4,930,089 - Psyr_4141 0.20 -0.5 4,930,089 - Psyr_4141 0.20 -0.7 4,930,089 - Psyr_4141 0.20 -2.2 4,930,089 - Psyr_4141 0.20 -0.2 4,930,232 + Psyr_4141 0.38 +1.3 4,930,232 + Psyr_4141 0.38 -1.1 4,930,232 + Psyr_4141 0.38 +2.3 4,930,233 - Psyr_4141 0.38 -1.6 4,930,233 - Psyr_4141 0.38 -1.3 4,930,233 - Psyr_4141 0.38 -1.6 4,930,233 - Psyr_4141 0.38 +0.3 4,930,233 - Psyr_4141 0.38 -1.1 4,930,233 - Psyr_4141 0.38 -1.4 4,930,444 - Psyr_4141 0.64 -1.1 4,930,510 + Psyr_4141 0.72 -0.1 4,930,715 + -0.9 4,930,736 + -1.1 4,930,736 + -0.7 4,930,737 - -2.7 4,930,737 - +1.7 4,930,823 + -0.3 4,930,823 + -1.1 4,930,823 + +1.3 4,930,823 + +0.8 4,930,823 + -0.8 4,930,823 + +1.3 4,930,823 + -1.8 4,930,823 + -3.1 4,930,824 - +0.4 4,930,824 - -1.5 4,930,824 - -0.7 4,930,824 - -0.2 4,930,824 - +1.3 4,930,824 - -0.9 4,930,824 - -0.9 4,930,825 + +1.3 4,930,825 + -1.8 4,930,826 - +0.1 4,930,826 - +1.8 4,930,920 + -1.9 4,930,934 + -1.7 4,930,934 + +0.1 4,930,935 - -0.7 4,930,938 + +0.3 4,930,939 - -0.3 4,930,939 - -1.5 4,932,011 + -1.1 4,932,011 + +0.0 4,932,011 + -0.4 4,932,026 + +0.4 4,932,112 + Psyr_4143 0.14 -0.3 4,932,431 + Psyr_4143 0.76 +2.8 4,932,431 + Psyr_4143 0.76 -2.0 4,932,544 + -1.5 4,932,548 + +0.4 4,932,548 + +0.6 4,932,548 + -1.6 4,932,548 + +0.1 4,932,548 + +0.0 4,932,548 + -1.1 4,932,550 + -0.2 4,932,550 + +1.4 4,932,550 + +1.0 4,932,550 + +0.3 4,932,550 + +0.7 4,932,560 + -0.2
Or see this region's nucleotide sequence