Experiment: KB with 4-hydroxychalcone 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3959 and Psyr_3960 overlap by 32 nucleotides Psyr_3960 and Psyr_3961 overlap by 17 nucleotides Psyr_3961 and Psyr_3962 are separated by 146 nucleotides
Psyr_3959: Psyr_3959 - L-aspartate oxidase, at 4,707,097 to 4,708,713
_3959
Psyr_3960: Psyr_3960 - conserved hypothetical protein, at 4,708,682 to 4,709,146
_3960
Psyr_3961: Psyr_3961 - Protein of unknown function DUF339, at 4,709,130 to 4,709,384
_3961
Psyr_3962: Psyr_3962 - Glycine cleavage T protein (aminomethyl transferase), at 4,709,531 to 4,710,478
_3962
Position (kb) 4709
4710 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4708.150 kb on + strand, within Psyr_3959 at 4708.151 kb on - strand, within Psyr_3959 at 4708.151 kb on - strand, within Psyr_3959 at 4708.151 kb on - strand, within Psyr_3959 at 4708.151 kb on - strand, within Psyr_3959 at 4708.151 kb on - strand, within Psyr_3959 at 4708.188 kb on + strand, within Psyr_3959 at 4708.208 kb on - strand, within Psyr_3959 at 4708.289 kb on - strand, within Psyr_3959 at 4708.444 kb on + strand, within Psyr_3959 at 4708.444 kb on + strand, within Psyr_3959 at 4708.444 kb on + strand, within Psyr_3959 at 4708.444 kb on + strand, within Psyr_3959 at 4708.444 kb on + strand, within Psyr_3959 at 4708.445 kb on - strand, within Psyr_3959 at 4708.445 kb on - strand, within Psyr_3959 at 4708.445 kb on - strand, within Psyr_3959 at 4708.528 kb on + strand, within Psyr_3959 at 4708.529 kb on - strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.537 kb on + strand, within Psyr_3959 at 4708.538 kb on - strand, within Psyr_3959 at 4708.640 kb on - strand at 4708.652 kb on - strand at 4708.683 kb on + strand at 4708.684 kb on - strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.702 kb on + strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.703 kb on - strand at 4708.771 kb on + strand, within Psyr_3960 at 4708.771 kb on + strand, within Psyr_3960 at 4708.771 kb on + strand, within Psyr_3960 at 4708.771 kb on + strand, within Psyr_3960 at 4708.772 kb on - strand, within Psyr_3960 at 4708.865 kb on + strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.892 kb on + strand, within Psyr_3960 at 4708.893 kb on - strand, within Psyr_3960 at 4708.974 kb on - strand, within Psyr_3960 at 4708.974 kb on - strand, within Psyr_3960 at 4709.000 kb on + strand, within Psyr_3960 at 4709.000 kb on + strand, within Psyr_3960 at 4709.001 kb on - strand, within Psyr_3960 at 4709.046 kb on + strand, within Psyr_3960 at 4709.047 kb on - strand, within Psyr_3960 at 4709.047 kb on - strand, within Psyr_3960 at 4709.082 kb on + strand, within Psyr_3960 at 4709.082 kb on + strand, within Psyr_3960 at 4709.082 kb on + strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.083 kb on - strand, within Psyr_3960 at 4709.222 kb on + strand, within Psyr_3961 at 4709.412 kb on + strand at 4709.412 kb on + strand at 4709.412 kb on + strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.413 kb on - strand at 4709.414 kb on + strand at 4709.414 kb on + strand at 4709.415 kb on - strand at 4709.415 kb on - strand at 4709.467 kb on + strand at 4709.467 kb on + strand at 4709.468 kb on - strand at 4709.468 kb on - strand at 4709.496 kb on + strand at 4709.496 kb on + strand at 4709.496 kb on + strand at 4709.496 kb on + strand at 4709.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with 4-hydroxychalcone 10 mM remove 4,708,150 + Psyr_3959 0.65 +0.2 4,708,151 - Psyr_3959 0.65 -0.5 4,708,151 - Psyr_3959 0.65 -0.3 4,708,151 - Psyr_3959 0.65 -0.6 4,708,151 - Psyr_3959 0.65 -0.6 4,708,151 - Psyr_3959 0.65 -0.3 4,708,188 + Psyr_3959 0.67 -0.5 4,708,208 - Psyr_3959 0.69 -1.0 4,708,289 - Psyr_3959 0.74 +0.3 4,708,444 + Psyr_3959 0.83 +1.3 4,708,444 + Psyr_3959 0.83 +0.8 4,708,444 + Psyr_3959 0.83 -0.7 4,708,444 + Psyr_3959 0.83 -1.1 4,708,444 + Psyr_3959 0.83 +0.3 4,708,445 - Psyr_3959 0.83 +2.3 4,708,445 - Psyr_3959 0.83 +1.3 4,708,445 - Psyr_3959 0.83 +0.1 4,708,528 + Psyr_3959 0.88 -1.3 4,708,529 - Psyr_3959 0.89 -1.6 4,708,537 + Psyr_3959 0.89 +0.9 4,708,537 + Psyr_3959 0.89 +0.8 4,708,537 + Psyr_3959 0.89 -1.1 4,708,537 + Psyr_3959 0.89 +0.7 4,708,537 + Psyr_3959 0.89 +0.5 4,708,538 - Psyr_3959 0.89 -1.1 4,708,640 - -1.0 4,708,652 - -0.0 4,708,683 + -0.7 4,708,684 - +0.4 4,708,702 + +0.6 4,708,702 + -0.5 4,708,702 + +0.5 4,708,702 + +0.8 4,708,702 + +1.3 4,708,702 + -0.4 4,708,703 - -0.4 4,708,703 - +0.4 4,708,703 - -0.9 4,708,771 + Psyr_3960 0.19 +0.8 4,708,771 + Psyr_3960 0.19 +0.9 4,708,771 + Psyr_3960 0.19 -2.1 4,708,771 + Psyr_3960 0.19 -1.4 4,708,772 - Psyr_3960 0.19 +0.9 4,708,865 + Psyr_3960 0.39 -0.4 4,708,892 + Psyr_3960 0.45 -0.2 4,708,892 + Psyr_3960 0.45 -1.1 4,708,892 + Psyr_3960 0.45 +0.3 4,708,892 + Psyr_3960 0.45 -0.7 4,708,892 + Psyr_3960 0.45 +2.1 4,708,892 + Psyr_3960 0.45 -1.6 4,708,893 - Psyr_3960 0.45 +1.0 4,708,974 - Psyr_3960 0.63 +0.1 4,708,974 - Psyr_3960 0.63 -2.9 4,709,000 + Psyr_3960 0.68 -0.7 4,709,000 + Psyr_3960 0.68 +4.1 4,709,001 - Psyr_3960 0.69 +3.4 4,709,046 + Psyr_3960 0.78 +0.7 4,709,047 - Psyr_3960 0.78 -0.6 4,709,047 - Psyr_3960 0.78 +0.4 4,709,082 + Psyr_3960 0.86 +0.8 4,709,082 + Psyr_3960 0.86 +0.1 4,709,082 + Psyr_3960 0.86 -2.4 4,709,083 - Psyr_3960 0.86 +1.6 4,709,083 - Psyr_3960 0.86 -0.2 4,709,083 - Psyr_3960 0.86 -0.4 4,709,083 - Psyr_3960 0.86 +0.1 4,709,222 + Psyr_3961 0.36 -0.6 4,709,412 + -0.5 4,709,412 + +1.3 4,709,412 + +0.1 4,709,413 - +0.1 4,709,413 - -0.6 4,709,413 - +1.4 4,709,414 + +0.2 4,709,414 + +0.3 4,709,415 - +0.5 4,709,415 - -2.2 4,709,467 + +0.3 4,709,467 + +0.2 4,709,468 - +0.5 4,709,468 - -1.3 4,709,496 + +0.8 4,709,496 + +0.1 4,709,496 + -0.2 4,709,496 + -1.0 4,709,497 - +0.0
Or see this region's nucleotide sequence