Experiment: KB with 4-hydroxychalcone 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3851 and Psyr_3852 are separated by 219 nucleotides Psyr_3852 and Psyr_3853 are separated by 147 nucleotides Psyr_3853 and Psyr_3854 are separated by 74 nucleotides
Psyr_3851: Psyr_3851 - conserved hypothetical protein, at 4,589,759 to 4,591,372
_3851
Psyr_3852: Psyr_3852 - lipoprotein SlyB, putative, at 4,591,592 to 4,592,056
_3852
Psyr_3853: Psyr_3853 - Pyridoxamine 5'-phosphate oxidase, at 4,592,204 to 4,592,851
_3853
Psyr_3854: Psyr_3854 - OmpA/MotB, at 4,592,926 to 4,594,086
_3854
Position (kb) 4591
4592
4593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4590.678 kb on - strand, within Psyr_3851 at 4590.678 kb on - strand, within Psyr_3851 at 4590.678 kb on - strand, within Psyr_3851 at 4590.678 kb on - strand, within Psyr_3851 at 4590.678 kb on - strand, within Psyr_3851 at 4590.678 kb on - strand, within Psyr_3851 at 4590.749 kb on + strand, within Psyr_3851 at 4590.749 kb on + strand, within Psyr_3851 at 4590.749 kb on + strand, within Psyr_3851 at 4590.750 kb on - strand, within Psyr_3851 at 4590.954 kb on - strand, within Psyr_3851 at 4590.954 kb on - strand, within Psyr_3851 at 4591.053 kb on - strand, within Psyr_3851 at 4591.053 kb on - strand, within Psyr_3851 at 4591.053 kb on - strand, within Psyr_3851 at 4591.053 kb on - strand, within Psyr_3851 at 4591.053 kb on - strand, within Psyr_3851 at 4591.234 kb on + strand at 4591.386 kb on - strand at 4591.386 kb on - strand at 4591.386 kb on - strand at 4591.413 kb on + strand at 4591.414 kb on - strand at 4591.414 kb on - strand at 4591.439 kb on + strand at 4591.439 kb on + strand at 4591.439 kb on + strand at 4591.439 kb on + strand at 4591.439 kb on + strand at 4591.509 kb on + strand at 4591.509 kb on + strand at 4591.509 kb on + strand at 4591.509 kb on + strand at 4591.543 kb on - strand at 4591.631 kb on - strand at 4591.684 kb on - strand, within Psyr_3852 at 4591.684 kb on - strand, within Psyr_3852 at 4591.944 kb on - strand, within Psyr_3852 at 4591.968 kb on + strand, within Psyr_3852 at 4591.993 kb on + strand, within Psyr_3852 at 4592.056 kb on + strand at 4592.056 kb on + strand at 4592.088 kb on + strand at 4592.134 kb on - strand at 4592.152 kb on + strand at 4592.167 kb on + strand at 4592.167 kb on + strand at 4592.196 kb on + strand at 4592.197 kb on - strand at 4592.197 kb on - strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.927 kb on + strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.928 kb on - strand at 4592.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with 4-hydroxychalcone 10 mM remove 4,590,678 - Psyr_3851 0.57 -0.0 4,590,678 - Psyr_3851 0.57 +0.5 4,590,678 - Psyr_3851 0.57 +2.3 4,590,678 - Psyr_3851 0.57 +0.1 4,590,678 - Psyr_3851 0.57 -0.1 4,590,678 - Psyr_3851 0.57 +0.6 4,590,749 + Psyr_3851 0.61 -1.1 4,590,749 + Psyr_3851 0.61 -0.6 4,590,749 + Psyr_3851 0.61 +0.3 4,590,750 - Psyr_3851 0.61 -0.3 4,590,954 - Psyr_3851 0.74 -0.5 4,590,954 - Psyr_3851 0.74 +0.6 4,591,053 - Psyr_3851 0.80 -0.3 4,591,053 - Psyr_3851 0.80 +2.1 4,591,053 - Psyr_3851 0.80 -0.0 4,591,053 - Psyr_3851 0.80 -0.4 4,591,053 - Psyr_3851 0.80 +1.0 4,591,234 + -0.1 4,591,386 - +0.7 4,591,386 - +1.5 4,591,386 - +0.5 4,591,413 + -0.8 4,591,414 - -0.2 4,591,414 - -1.3 4,591,439 + -0.0 4,591,439 + +0.5 4,591,439 + -0.6 4,591,439 + -0.7 4,591,439 + -2.8 4,591,509 + -2.1 4,591,509 + +0.6 4,591,509 + -0.2 4,591,509 + +1.1 4,591,543 - -1.0 4,591,631 - -0.3 4,591,684 - Psyr_3852 0.20 +0.3 4,591,684 - Psyr_3852 0.20 +4.1 4,591,944 - Psyr_3852 0.76 +0.3 4,591,968 + Psyr_3852 0.81 +0.9 4,591,993 + Psyr_3852 0.86 +0.7 4,592,056 + +0.1 4,592,056 + -0.7 4,592,088 + +1.3 4,592,134 - +0.3 4,592,152 + -1.4 4,592,167 + -0.4 4,592,167 + -1.3 4,592,196 + -1.1 4,592,197 - -0.7 4,592,197 - -0.2 4,592,927 + -2.2 4,592,927 + +1.9 4,592,927 + -3.2 4,592,927 + -2.5 4,592,927 + -3.2 4,592,927 + -0.0 4,592,927 + -1.8 4,592,928 - +2.6 4,592,928 - +0.1 4,592,928 - -0.6 4,592,928 - +3.6 4,592,928 - -1.0
Or see this region's nucleotide sequence