Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0495

Experiment: KB with 4-hydroxychalcone 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0494 and Psyr_0495 are separated by 138 nucleotidesPsyr_0495 and Psyr_0496 are separated by 169 nucleotides Psyr_0494: Psyr_0494 - Protein of unknown function UPF0061, at 535,554 to 537,017 _0494 Psyr_0495: Psyr_0495 - transcriptional regulator, GntR family, at 537,156 to 537,905 _0495 Psyr_0496: Psyr_0496 - membrane protein, putative, at 538,075 to 539,307 _0496 Position (kb) 537 538Strain fitness (log2 ratio) -2 -1 0 1 2at 536.240 kb on + strand, within Psyr_0494at 536.444 kb on - strand, within Psyr_0494at 536.444 kb on - strand, within Psyr_0494at 536.444 kb on - strand, within Psyr_0494at 536.452 kb on + strand, within Psyr_0494at 536.452 kb on + strand, within Psyr_0494at 536.716 kb on + strand, within Psyr_0494at 536.717 kb on - strand, within Psyr_0494at 536.764 kb on + strand, within Psyr_0494at 536.764 kb on + strand, within Psyr_0494at 536.765 kb on - strand, within Psyr_0494at 536.765 kb on - strand, within Psyr_0494at 536.765 kb on - strand, within Psyr_0494at 536.788 kb on + strand, within Psyr_0494at 536.788 kb on + strand, within Psyr_0494at 536.788 kb on + strand, within Psyr_0494at 536.914 kb on - strandat 537.128 kb on - strandat 537.292 kb on + strand, within Psyr_0495at 537.293 kb on - strand, within Psyr_0495at 537.293 kb on - strand, within Psyr_0495at 537.364 kb on + strand, within Psyr_0495at 537.365 kb on - strand, within Psyr_0495at 537.566 kb on - strand, within Psyr_0495at 537.566 kb on - strand, within Psyr_0495at 537.587 kb on + strand, within Psyr_0495at 537.651 kb on + strand, within Psyr_0495at 537.651 kb on + strand, within Psyr_0495at 537.674 kb on + strand, within Psyr_0495at 537.674 kb on + strand, within Psyr_0495at 537.804 kb on - strand, within Psyr_0495at 537.804 kb on - strand, within Psyr_0495at 537.804 kb on - strand, within Psyr_0495at 537.804 kb on - strand, within Psyr_0495at 537.822 kb on - strand, within Psyr_0495at 537.853 kb on + strandat 537.910 kb on + strandat 537.911 kb on - strandat 537.966 kb on + strandat 537.966 kb on + strandat 537.966 kb on + strandat 537.966 kb on + strandat 537.966 kb on + strandat 537.967 kb on - strandat 537.984 kb on + strandat 537.984 kb on + strandat 537.984 kb on + strandat 537.984 kb on + strandat 537.984 kb on + strandat 537.990 kb on + strandat 537.990 kb on + strandat 537.991 kb on - strandat 537.991 kb on - strandat 537.991 kb on - strandat 537.994 kb on + strandat 537.995 kb on - strandat 537.995 kb on - strandat 537.998 kb on + strandat 537.998 kb on + strandat 537.998 kb on + strandat 538.675 kb on + strand, within Psyr_0496at 538.675 kb on + strand, within Psyr_0496at 538.675 kb on + strand, within Psyr_0496at 538.676 kb on - strand, within Psyr_0496at 538.677 kb on + strand, within Psyr_0496at 538.677 kb on + strand, within Psyr_0496at 538.677 kb on + strand, within Psyr_0496at 538.684 kb on + strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.792 kb on + strand, within Psyr_0496at 538.792 kb on + strand, within Psyr_0496at 538.793 kb on - strand, within Psyr_0496at 538.793 kb on - strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with 4-hydroxychalcone 10 mM
remove
536,240 + Psyr_0494 0.47 -0.9
536,444 - Psyr_0494 0.61 +1.1
536,444 - Psyr_0494 0.61 +0.1
536,444 - Psyr_0494 0.61 +1.4
536,452 + Psyr_0494 0.61 +0.8
536,452 + Psyr_0494 0.61 +0.6
536,716 + Psyr_0494 0.79 -0.1
536,717 - Psyr_0494 0.79 +0.2
536,764 + Psyr_0494 0.83 +0.0
536,764 + Psyr_0494 0.83 -0.2
536,765 - Psyr_0494 0.83 +0.8
536,765 - Psyr_0494 0.83 -0.1
536,765 - Psyr_0494 0.83 -0.6
536,788 + Psyr_0494 0.84 -0.3
536,788 + Psyr_0494 0.84 +1.7
536,788 + Psyr_0494 0.84 -1.3
536,914 - -0.1
537,128 - -1.1
537,292 + Psyr_0495 0.18 +0.7
537,293 - Psyr_0495 0.18 -0.8
537,293 - Psyr_0495 0.18 -1.6
537,364 + Psyr_0495 0.28 -0.9
537,365 - Psyr_0495 0.28 -0.1
537,566 - Psyr_0495 0.55 -0.2
537,566 - Psyr_0495 0.55 -0.9
537,587 + Psyr_0495 0.57 -1.2
537,651 + Psyr_0495 0.66 +0.4
537,651 + Psyr_0495 0.66 -1.0
537,674 + Psyr_0495 0.69 +0.0
537,674 + Psyr_0495 0.69 +0.4
537,804 - Psyr_0495 0.86 +0.9
537,804 - Psyr_0495 0.86 -1.7
537,804 - Psyr_0495 0.86 -0.6
537,804 - Psyr_0495 0.86 +1.4
537,822 - Psyr_0495 0.89 +0.5
537,853 + +1.1
537,910 + +0.3
537,911 - +0.4
537,966 + +1.1
537,966 + -0.6
537,966 + -1.0
537,966 + +0.2
537,966 + -1.1
537,967 - -0.6
537,984 + -0.0
537,984 + +1.0
537,984 + -0.8
537,984 + -0.2
537,984 + -0.7
537,990 + +0.3
537,990 + +0.3
537,991 - -0.6
537,991 - +1.4
537,991 - -0.7
537,994 + +1.3
537,995 - +0.3
537,995 - -0.3
537,998 + -0.6
537,998 + -0.6
537,998 + -0.6
538,675 + Psyr_0496 0.49 -1.0
538,675 + Psyr_0496 0.49 +0.1
538,675 + Psyr_0496 0.49 -0.3
538,676 - Psyr_0496 0.49 -0.9
538,677 + Psyr_0496 0.49 +0.3
538,677 + Psyr_0496 0.49 -0.3
538,677 + Psyr_0496 0.49 -1.5
538,684 + Psyr_0496 0.49 -0.0
538,685 - Psyr_0496 0.49 +0.4
538,685 - Psyr_0496 0.49 +0.2
538,742 + Psyr_0496 0.54 +0.8
538,742 + Psyr_0496 0.54 +0.2
538,742 + Psyr_0496 0.54 +0.1
538,742 + Psyr_0496 0.54 -1.9
538,742 + Psyr_0496 0.54 +0.0
538,742 + Psyr_0496 0.54 -1.4
538,742 + Psyr_0496 0.54 +0.8
538,742 + Psyr_0496 0.54 -0.1
538,743 - Psyr_0496 0.54 +0.1
538,743 - Psyr_0496 0.54 -0.4
538,743 - Psyr_0496 0.54 +0.3
538,743 - Psyr_0496 0.54 -0.2
538,743 - Psyr_0496 0.54 -1.0
538,792 + Psyr_0496 0.58 +0.0
538,792 + Psyr_0496 0.58 +0.2
538,793 - Psyr_0496 0.58 -0.5
538,793 - Psyr_0496 0.58 -0.4
538,796 + Psyr_0496 0.58 -0.9
538,796 + Psyr_0496 0.58 -0.2
538,796 + Psyr_0496 0.58 -0.4
538,796 + Psyr_0496 0.58 -0.6
538,797 - Psyr_0496 0.59 -0.5
538,797 - Psyr_0496 0.59 +2.4
538,797 - Psyr_0496 0.59 +2.4

Or see this region's nucleotide sequence