Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0169

Experiment: KB with 4-hydroxychalcone 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0168 and Psyr_0169 are separated by 179 nucleotidesPsyr_0169 and Psyr_0170 are separated by 177 nucleotidesPsyr_0170 and Psyr_0171 are separated by 167 nucleotides Psyr_0168: Psyr_0168 - Phosphoenolpyruvate carboxykinase (ATP), at 182,216 to 183,760 _0168 Psyr_0169: Psyr_0169 - Hsp33 protein, at 183,940 to 184,842 _0169 Psyr_0170: Psyr_0170 - heat shock protein Hsp15, at 185,020 to 185,427 _0170 Psyr_0171: Psyr_0171 - EAL, at 185,595 to 186,377 _0171 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1 2 3at 182.988 kb on + strand, within Psyr_0168at 182.989 kb on - strand, within Psyr_0168at 183.116 kb on + strand, within Psyr_0168at 183.116 kb on + strand, within Psyr_0168at 183.116 kb on + strand, within Psyr_0168at 183.116 kb on + strand, within Psyr_0168at 183.116 kb on + strand, within Psyr_0168at 183.117 kb on - strand, within Psyr_0168at 183.117 kb on - strand, within Psyr_0168at 183.117 kb on - strand, within Psyr_0168at 183.117 kb on - strand, within Psyr_0168at 183.272 kb on + strand, within Psyr_0168at 183.272 kb on + strand, within Psyr_0168at 183.366 kb on + strand, within Psyr_0168at 183.366 kb on + strand, within Psyr_0168at 183.366 kb on + strand, within Psyr_0168at 183.366 kb on + strand, within Psyr_0168at 183.367 kb on - strand, within Psyr_0168at 183.367 kb on - strand, within Psyr_0168at 183.464 kb on + strand, within Psyr_0168at 183.465 kb on - strand, within Psyr_0168at 183.465 kb on - strand, within Psyr_0168at 183.465 kb on - strand, within Psyr_0168at 183.465 kb on - strand, within Psyr_0168at 183.678 kb on - strandat 183.735 kb on + strandat 183.735 kb on + strandat 183.735 kb on + strandat 183.735 kb on + strandat 183.736 kb on - strandat 183.736 kb on - strandat 183.736 kb on - strandat 183.849 kb on + strandat 183.850 kb on - strandat 183.873 kb on + strandat 183.873 kb on + strandat 183.874 kb on - strandat 183.898 kb on + strandat 183.899 kb on - strandat 183.899 kb on - strandat 183.899 kb on - strandat 183.942 kb on - strandat 184.017 kb on - strandat 184.017 kb on - strandat 184.403 kb on + strand, within Psyr_0169at 184.403 kb on + strand, within Psyr_0169at 184.403 kb on + strand, within Psyr_0169at 184.403 kb on + strand, within Psyr_0169at 184.404 kb on - strand, within Psyr_0169at 184.404 kb on - strand, within Psyr_0169at 184.404 kb on - strand, within Psyr_0169at 184.751 kb on + strand, within Psyr_0169at 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.842 kb on + strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.843 kb on - strandat 184.846 kb on + strandat 184.846 kb on + strandat 184.855 kb on + strandat 184.856 kb on - strandat 184.856 kb on - strandat 184.856 kb on - strandat 184.856 kb on - strandat 184.864 kb on + strandat 184.864 kb on + strandat 184.864 kb on + strandat 184.864 kb on + strandat 184.865 kb on - strandat 184.865 kb on - strandat 184.947 kb on + strandat 184.954 kb on + strandat 184.954 kb on + strandat 184.954 kb on + strandat 184.954 kb on + strandat 184.954 kb on + strandat 184.955 kb on - strandat 185.224 kb on + strand, within Psyr_0170at 185.385 kb on + strand, within Psyr_0170at 185.385 kb on + strand, within Psyr_0170at 185.386 kb on - strand, within Psyr_0170at 185.526 kb on + strandat 185.527 kb on - strandat 185.566 kb on + strandat 185.566 kb on + strandat 185.567 kb on - strandat 185.682 kb on + strand, within Psyr_0171at 185.682 kb on + strand, within Psyr_0171at 185.683 kb on - strand, within Psyr_0171

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with 4-hydroxychalcone 10 mM
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182,988 + Psyr_0168 0.50 +0.2
182,989 - Psyr_0168 0.50 -0.3
183,116 + Psyr_0168 0.58 +0.9
183,116 + Psyr_0168 0.58 -0.5
183,116 + Psyr_0168 0.58 +0.6
183,116 + Psyr_0168 0.58 -0.2
183,116 + Psyr_0168 0.58 +0.9
183,117 - Psyr_0168 0.58 -0.3
183,117 - Psyr_0168 0.58 +0.4
183,117 - Psyr_0168 0.58 +0.7
183,117 - Psyr_0168 0.58 -0.4
183,272 + Psyr_0168 0.68 +1.9
183,272 + Psyr_0168 0.68 -0.0
183,366 + Psyr_0168 0.74 +3.5
183,366 + Psyr_0168 0.74 -0.1
183,366 + Psyr_0168 0.74 +3.1
183,366 + Psyr_0168 0.74 +0.4
183,367 - Psyr_0168 0.74 +0.3
183,367 - Psyr_0168 0.74 -0.3
183,464 + Psyr_0168 0.81 -0.3
183,465 - Psyr_0168 0.81 +0.3
183,465 - Psyr_0168 0.81 +0.5
183,465 - Psyr_0168 0.81 -0.3
183,465 - Psyr_0168 0.81 -0.3
183,678 - +0.8
183,735 + -1.4
183,735 + +2.2
183,735 + -0.5
183,735 + -1.9
183,736 - -0.9
183,736 - -0.8
183,736 - -0.2
183,849 + +0.2
183,850 - +0.2
183,873 + +0.5
183,873 + +0.1
183,874 - -0.2
183,898 + +0.8
183,899 - +0.5
183,899 - +0.1
183,899 - +0.3
183,942 - -2.0
184,017 - -0.1
184,017 - +0.3
184,403 + Psyr_0169 0.51 -1.2
184,403 + Psyr_0169 0.51 +1.5
184,403 + Psyr_0169 0.51 -1.7
184,403 + Psyr_0169 0.51 -0.8
184,404 - Psyr_0169 0.51 +0.3
184,404 - Psyr_0169 0.51 -0.6
184,404 - Psyr_0169 0.51 -1.0
184,751 + Psyr_0169 0.90 -0.3
184,842 + -1.7
184,842 + -0.3
184,842 + -1.5
184,842 + -0.7
184,842 + +1.2
184,842 + -0.3
184,842 + -0.9
184,842 + +1.1
184,842 + +0.4
184,842 + -1.9
184,843 - -0.2
184,843 - +0.8
184,843 - -0.1
184,843 - +0.3
184,843 - -0.7
184,843 - -2.0
184,843 - -1.7
184,843 - -0.4
184,843 - -0.9
184,843 - +0.3
184,843 - -0.4
184,843 - -0.9
184,846 + -0.0
184,846 + +1.5
184,855 + -0.9
184,856 - -0.5
184,856 - +0.4
184,856 - +2.1
184,856 - -0.5
184,864 + +0.4
184,864 + -0.3
184,864 + +2.3
184,864 + -0.9
184,865 - -2.2
184,865 - -0.1
184,947 + +0.9
184,954 + +2.5
184,954 + +0.1
184,954 + +0.6
184,954 + -1.4
184,954 + -1.1
184,955 - -1.0
185,224 + Psyr_0170 0.50 +1.5
185,385 + Psyr_0170 0.89 -0.0
185,385 + Psyr_0170 0.89 +0.4
185,386 - Psyr_0170 0.90 -0.2
185,526 + +0.5
185,527 - +0.8
185,566 + +0.4
185,566 + -1.3
185,567 - -0.9
185,682 + Psyr_0171 0.11 -0.6
185,682 + Psyr_0171 0.11 +0.3
185,683 - Psyr_0171 0.11 +0.8

Or see this region's nucleotide sequence