Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4646 and Psyr_4647 are separated by 25 nucleotides Psyr_4647 and Psyr_4648 are separated by 66 nucleotides Psyr_4648 and Psyr_4649 are separated by 79 nucleotides Psyr_4649 and Psyr_4650 overlap by 8 nucleotides
Psyr_4646: Psyr_4646 - Phage integrase:Phage integrase, N-terminal SAM-like protein, at 5,509,622 to 5,510,575
_4646
Psyr_4647: Psyr_4647 - hypothetical protein, at 5,510,601 to 5,510,921
_4647
Psyr_4648: Psyr_4648 - hypothetical protein, at 5,510,988 to 5,511,227
_4648
Psyr_4649: Psyr_4649 - GCN5-related N-acetyltransferase, at 5,511,307 to 5,511,816
_4649
Psyr_4650: Psyr_4650 - CDS, at 5,511,809 to 5,512,489
_4650
Position (kb) 5511
5512 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5510.354 kb on + strand, within Psyr_4646 at 5510.354 kb on + strand, within Psyr_4646 at 5510.354 kb on + strand, within Psyr_4646 at 5510.354 kb on + strand, within Psyr_4646 at 5510.354 kb on + strand, within Psyr_4646 at 5510.354 kb on + strand, within Psyr_4646 at 5510.354 kb on + strand, within Psyr_4646 at 5510.354 kb on + strand, within Psyr_4646 at 5510.355 kb on - strand, within Psyr_4646 at 5510.355 kb on - strand, within Psyr_4646 at 5510.355 kb on - strand, within Psyr_4646 at 5510.355 kb on - strand, within Psyr_4646 at 5510.355 kb on - strand, within Psyr_4646 at 5510.355 kb on - strand, within Psyr_4646 at 5510.355 kb on - strand, within Psyr_4646 at 5510.355 kb on - strand, within Psyr_4646 at 5510.355 kb on - strand, within Psyr_4646 at 5510.355 kb on - strand, within Psyr_4646 at 5510.355 kb on - strand, within Psyr_4646 at 5510.355 kb on - strand, within Psyr_4646 at 5510.357 kb on - strand, within Psyr_4646 at 5510.519 kb on + strand at 5510.519 kb on + strand at 5510.519 kb on + strand at 5510.519 kb on + strand at 5510.519 kb on + strand at 5510.519 kb on + strand at 5510.519 kb on + strand at 5510.519 kb on + strand at 5510.519 kb on + strand at 5510.519 kb on + strand at 5510.519 kb on + strand at 5510.520 kb on - strand at 5510.520 kb on - strand at 5510.520 kb on - strand at 5510.520 kb on - strand at 5510.520 kb on - strand at 5510.589 kb on + strand at 5510.589 kb on + strand at 5510.589 kb on + strand at 5510.589 kb on + strand at 5510.589 kb on + strand at 5510.589 kb on + strand at 5510.589 kb on + strand at 5510.590 kb on - strand at 5510.590 kb on - strand at 5510.590 kb on - strand at 5510.590 kb on - strand at 5510.590 kb on - strand at 5510.590 kb on - strand at 5510.590 kb on - strand at 5510.593 kb on + strand at 5510.603 kb on - strand at 5510.642 kb on - strand, within Psyr_4647 at 5510.642 kb on - strand, within Psyr_4647 at 5510.734 kb on + strand, within Psyr_4647 at 5510.735 kb on - strand, within Psyr_4647 at 5510.735 kb on - strand, within Psyr_4647 at 5510.735 kb on - strand, within Psyr_4647 at 5510.760 kb on + strand, within Psyr_4647 at 5510.760 kb on + strand, within Psyr_4647 at 5510.761 kb on - strand, within Psyr_4647 at 5510.761 kb on - strand, within Psyr_4647 at 5510.831 kb on + strand, within Psyr_4647 at 5510.831 kb on + strand, within Psyr_4647 at 5510.831 kb on + strand, within Psyr_4647 at 5510.831 kb on + strand, within Psyr_4647 at 5510.831 kb on + strand, within Psyr_4647 at 5510.832 kb on - strand, within Psyr_4647 at 5510.832 kb on - strand, within Psyr_4647 at 5510.832 kb on - strand, within Psyr_4647 at 5510.832 kb on - strand, within Psyr_4647 at 5510.915 kb on + strand at 5510.915 kb on + strand at 5510.916 kb on - strand at 5510.935 kb on + strand at 5510.935 kb on + strand at 5510.935 kb on + strand at 5510.936 kb on - strand at 5510.936 kb on - strand at 5510.990 kb on - strand at 5511.023 kb on + strand, within Psyr_4648 at 5511.023 kb on + strand, within Psyr_4648 at 5511.023 kb on + strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.024 kb on - strand, within Psyr_4648 at 5511.039 kb on + strand, within Psyr_4648 at 5511.040 kb on - strand, within Psyr_4648 at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.212 kb on + strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.213 kb on - strand at 5511.250 kb on - strand at 5511.281 kb on + strand at 5511.281 kb on + strand at 5511.281 kb on + strand at 5511.282 kb on - strand at 5511.282 kb on - strand at 5511.282 kb on - strand at 5511.297 kb on - strand at 5511.328 kb on - strand at 5511.339 kb on + strand at 5511.339 kb on + strand at 5511.339 kb on + strand at 5511.339 kb on + strand at 5511.340 kb on - strand at 5511.340 kb on - strand at 5511.340 kb on - strand at 5511.340 kb on - strand at 5511.340 kb on - strand at 5511.342 kb on + strand at 5511.343 kb on - strand at 5511.343 kb on - strand at 5511.343 kb on - strand at 5511.401 kb on + strand, within Psyr_4649 at 5511.401 kb on + strand, within Psyr_4649 at 5511.401 kb on + strand, within Psyr_4649 at 5511.481 kb on + strand, within Psyr_4649 at 5511.482 kb on - strand, within Psyr_4649 at 5511.486 kb on + strand, within Psyr_4649 at 5511.636 kb on + strand, within Psyr_4649 at 5511.636 kb on + strand, within Psyr_4649 at 5511.636 kb on + strand, within Psyr_4649 at 5511.637 kb on - strand, within Psyr_4649 at 5511.637 kb on - strand, within Psyr_4649 at 5511.637 kb on - strand, within Psyr_4649 at 5511.637 kb on - strand, within Psyr_4649 at 5511.637 kb on - strand, within Psyr_4649 at 5511.671 kb on + strand, within Psyr_4649 at 5511.671 kb on + strand, within Psyr_4649 at 5511.672 kb on - strand, within Psyr_4649 at 5511.689 kb on + strand, within Psyr_4649 at 5511.689 kb on + strand, within Psyr_4649 at 5511.689 kb on + strand, within Psyr_4649 at 5511.689 kb on + strand, within Psyr_4649 at 5511.690 kb on - strand, within Psyr_4649 at 5511.748 kb on + strand, within Psyr_4649 at 5511.748 kb on + strand, within Psyr_4649 at 5511.749 kb on - strand, within Psyr_4649 at 5511.749 kb on - strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.753 kb on + strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.754 kb on - strand, within Psyr_4649 at 5511.763 kb on + strand, within Psyr_4649 at 5511.764 kb on - strand, within Psyr_4649 at 5511.794 kb on + strand at 5511.795 kb on - strand at 5511.795 kb on - strand at 5511.795 kb on - strand at 5511.795 kb on - strand at 5511.795 kb on - strand at 5511.818 kb on + strand at 5511.818 kb on + strand at 5511.818 kb on + strand at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.881 kb on + strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.882 kb on - strand, within Psyr_4650 at 5511.895 kb on - strand, within Psyr_4650 at 5511.895 kb on - strand, within Psyr_4650 at 5511.895 kb on - strand, within Psyr_4650 at 5511.900 kb on + strand, within Psyr_4650 at 5512.097 kb on - strand, within Psyr_4650 at 5512.104 kb on + strand, within Psyr_4650 at 5512.104 kb on + strand, within Psyr_4650 at 5512.208 kb on + strand, within Psyr_4650 at 5512.260 kb on + strand, within Psyr_4650 at 5512.261 kb on - strand, within Psyr_4650 at 5512.261 kb on - strand, within Psyr_4650 at 5512.261 kb on - strand, within Psyr_4650 at 5512.261 kb on - strand, within Psyr_4650 at 5512.278 kb on + strand, within Psyr_4650 at 5512.278 kb on + strand, within Psyr_4650 at 5512.278 kb on + strand, within Psyr_4650 at 5512.393 kb on - strand, within Psyr_4650 at 5512.483 kb on - strand at 5512.522 kb on - strand at 5512.533 kb on + strand at 5512.533 kb on + strand at 5512.534 kb on - strand at 5512.534 kb on - strand at 5512.534 kb on - strand at 5512.534 kb on - strand at 5512.689 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 5,510,354 + Psyr_4646 0.77 -1.3 5,510,354 + Psyr_4646 0.77 +2.6 5,510,354 + Psyr_4646 0.77 -0.9 5,510,354 + Psyr_4646 0.77 +0.9 5,510,354 + Psyr_4646 0.77 +0.2 5,510,354 + Psyr_4646 0.77 +0.4 5,510,354 + Psyr_4646 0.77 -0.0 5,510,354 + Psyr_4646 0.77 +1.2 5,510,355 - Psyr_4646 0.77 -0.7 5,510,355 - Psyr_4646 0.77 +2.2 5,510,355 - Psyr_4646 0.77 -0.0 5,510,355 - Psyr_4646 0.77 +0.2 5,510,355 - Psyr_4646 0.77 +0.8 5,510,355 - Psyr_4646 0.77 -0.0 5,510,355 - Psyr_4646 0.77 -0.1 5,510,355 - Psyr_4646 0.77 +3.2 5,510,355 - Psyr_4646 0.77 -0.9 5,510,355 - Psyr_4646 0.77 -0.9 5,510,355 - Psyr_4646 0.77 -0.2 5,510,355 - Psyr_4646 0.77 +1.2 5,510,357 - Psyr_4646 0.77 -0.4 5,510,519 + -0.6 5,510,519 + +1.4 5,510,519 + -1.3 5,510,519 + +0.2 5,510,519 + -1.0 5,510,519 + +2.0 5,510,519 + +0.0 5,510,519 + -0.1 5,510,519 + +0.2 5,510,519 + +2.4 5,510,519 + +0.5 5,510,520 - -1.1 5,510,520 - -0.7 5,510,520 - +0.8 5,510,520 - -0.3 5,510,520 - -0.4 5,510,589 + -1.3 5,510,589 + +0.2 5,510,589 + +1.1 5,510,589 + +0.5 5,510,589 + -1.1 5,510,589 + +1.4 5,510,589 + +1.2 5,510,590 - -0.1 5,510,590 - -1.5 5,510,590 - +0.5 5,510,590 - -0.9 5,510,590 - -0.7 5,510,590 - -2.6 5,510,590 - +0.3 5,510,593 + -2.3 5,510,603 - +1.2 5,510,642 - Psyr_4647 0.13 +0.8 5,510,642 - Psyr_4647 0.13 -0.9 5,510,734 + Psyr_4647 0.41 -0.8 5,510,735 - Psyr_4647 0.42 +1.4 5,510,735 - Psyr_4647 0.42 -0.3 5,510,735 - Psyr_4647 0.42 +2.2 5,510,760 + Psyr_4647 0.50 +1.1 5,510,760 + Psyr_4647 0.50 +0.0 5,510,761 - Psyr_4647 0.50 +0.5 5,510,761 - Psyr_4647 0.50 +0.9 5,510,831 + Psyr_4647 0.72 +2.2 5,510,831 + Psyr_4647 0.72 +1.5 5,510,831 + Psyr_4647 0.72 -1.1 5,510,831 + Psyr_4647 0.72 +0.7 5,510,831 + Psyr_4647 0.72 -1.3 5,510,832 - Psyr_4647 0.72 +2.2 5,510,832 - Psyr_4647 0.72 +0.7 5,510,832 - Psyr_4647 0.72 +3.2 5,510,832 - Psyr_4647 0.72 +2.3 5,510,915 + +0.8 5,510,915 + +0.7 5,510,916 - -1.8 5,510,935 + +0.1 5,510,935 + +0.4 5,510,935 + +0.1 5,510,936 - +0.3 5,510,936 - -1.6 5,510,990 - -0.5 5,511,023 + Psyr_4648 0.15 +1.0 5,511,023 + Psyr_4648 0.15 -0.9 5,511,023 + Psyr_4648 0.15 +0.0 5,511,024 - Psyr_4648 0.15 +0.9 5,511,024 - Psyr_4648 0.15 +1.5 5,511,024 - Psyr_4648 0.15 +0.6 5,511,024 - Psyr_4648 0.15 +0.2 5,511,024 - Psyr_4648 0.15 +1.3 5,511,039 + Psyr_4648 0.21 -1.5 5,511,040 - Psyr_4648 0.22 -0.8 5,511,212 + -0.1 5,511,212 + +0.2 5,511,212 + +1.5 5,511,212 + +1.8 5,511,212 + -0.6 5,511,212 + -0.9 5,511,212 + -0.7 5,511,212 + -1.7 5,511,212 + +0.2 5,511,212 + -1.6 5,511,212 + +2.0 5,511,212 + +1.0 5,511,212 + -0.2 5,511,212 + +0.3 5,511,213 - -0.5 5,511,213 - -1.4 5,511,213 - -0.3 5,511,213 - +0.1 5,511,213 - -0.1 5,511,213 - +0.7 5,511,213 - +0.0 5,511,213 - +1.0 5,511,213 - -0.3 5,511,213 - +0.2 5,511,213 - +0.3 5,511,213 - +1.2 5,511,213 - -1.2 5,511,213 - +1.7 5,511,213 - +3.6 5,511,213 - -2.2 5,511,213 - -1.2 5,511,213 - +0.1 5,511,213 - +0.4 5,511,213 - +0.7 5,511,250 - +0.0 5,511,281 + -2.9 5,511,281 + +1.5 5,511,281 + +0.7 5,511,282 - -1.3 5,511,282 - -0.5 5,511,282 - -0.0 5,511,297 - -1.0 5,511,328 - -0.5 5,511,339 + -0.9 5,511,339 + +1.2 5,511,339 + -0.1 5,511,339 + +0.0 5,511,340 - -0.8 5,511,340 - +0.5 5,511,340 - -1.1 5,511,340 - +0.1 5,511,340 - -0.5 5,511,342 + +0.0 5,511,343 - +0.3 5,511,343 - +0.5 5,511,343 - -0.9 5,511,401 + Psyr_4649 0.18 +0.8 5,511,401 + Psyr_4649 0.18 -0.6 5,511,401 + Psyr_4649 0.18 -0.5 5,511,481 + Psyr_4649 0.34 -0.2 5,511,482 - Psyr_4649 0.34 -0.3 5,511,486 + Psyr_4649 0.35 +0.9 5,511,636 + Psyr_4649 0.65 -0.5 5,511,636 + Psyr_4649 0.65 -0.8 5,511,636 + Psyr_4649 0.65 -1.6 5,511,637 - Psyr_4649 0.65 -1.1 5,511,637 - Psyr_4649 0.65 -0.2 5,511,637 - Psyr_4649 0.65 -1.8 5,511,637 - Psyr_4649 0.65 +0.7 5,511,637 - Psyr_4649 0.65 -0.3 5,511,671 + Psyr_4649 0.71 +1.5 5,511,671 + Psyr_4649 0.71 +1.1 5,511,672 - Psyr_4649 0.72 -0.4 5,511,689 + Psyr_4649 0.75 +0.4 5,511,689 + Psyr_4649 0.75 -0.5 5,511,689 + Psyr_4649 0.75 -2.0 5,511,689 + Psyr_4649 0.75 -1.8 5,511,690 - Psyr_4649 0.75 +0.6 5,511,748 + Psyr_4649 0.86 +0.7 5,511,748 + Psyr_4649 0.86 +1.6 5,511,749 - Psyr_4649 0.87 -0.4 5,511,749 - Psyr_4649 0.87 +0.4 5,511,753 + Psyr_4649 0.87 +0.7 5,511,753 + Psyr_4649 0.87 +2.2 5,511,753 + Psyr_4649 0.87 -0.9 5,511,753 + Psyr_4649 0.87 -0.2 5,511,753 + Psyr_4649 0.87 +2.2 5,511,754 - Psyr_4649 0.88 -0.2 5,511,754 - Psyr_4649 0.88 -0.2 5,511,754 - Psyr_4649 0.88 -2.2 5,511,754 - Psyr_4649 0.88 -0.6 5,511,754 - Psyr_4649 0.88 -0.3 5,511,754 - Psyr_4649 0.88 +0.7 5,511,754 - Psyr_4649 0.88 +0.8 5,511,754 - Psyr_4649 0.88 -0.3 5,511,754 - Psyr_4649 0.88 +0.3 5,511,754 - Psyr_4649 0.88 -0.0 5,511,754 - Psyr_4649 0.88 +0.7 5,511,754 - Psyr_4649 0.88 -0.3 5,511,763 + Psyr_4649 0.89 -0.2 5,511,764 - Psyr_4649 0.90 +1.2 5,511,794 + -0.3 5,511,795 - -2.1 5,511,795 - +0.4 5,511,795 - -2.3 5,511,795 - -0.4 5,511,795 - +1.1 5,511,818 + -1.0 5,511,818 + +1.4 5,511,818 + -1.3 5,511,881 + Psyr_4650 0.11 +1.2 5,511,881 + Psyr_4650 0.11 -2.2 5,511,881 + Psyr_4650 0.11 +0.7 5,511,881 + Psyr_4650 0.11 -1.1 5,511,881 + Psyr_4650 0.11 -0.5 5,511,882 - Psyr_4650 0.11 -0.6 5,511,882 - Psyr_4650 0.11 +0.2 5,511,882 - Psyr_4650 0.11 -0.2 5,511,882 - Psyr_4650 0.11 -0.5 5,511,882 - Psyr_4650 0.11 -0.4 5,511,882 - Psyr_4650 0.11 +1.1 5,511,882 - Psyr_4650 0.11 +0.0 5,511,895 - Psyr_4650 0.13 -0.6 5,511,895 - Psyr_4650 0.13 -0.1 5,511,895 - Psyr_4650 0.13 +0.9 5,511,900 + Psyr_4650 0.13 -0.0 5,512,097 - Psyr_4650 0.42 +1.1 5,512,104 + Psyr_4650 0.43 -0.3 5,512,104 + Psyr_4650 0.43 -0.1 5,512,208 + Psyr_4650 0.59 +3.6 5,512,260 + Psyr_4650 0.66 +1.1 5,512,261 - Psyr_4650 0.66 +0.1 5,512,261 - Psyr_4650 0.66 +0.7 5,512,261 - Psyr_4650 0.66 +0.3 5,512,261 - Psyr_4650 0.66 -0.0 5,512,278 + Psyr_4650 0.69 +0.1 5,512,278 + Psyr_4650 0.69 +0.7 5,512,278 + Psyr_4650 0.69 -0.6 5,512,393 - Psyr_4650 0.86 +0.7 5,512,483 - +0.9 5,512,522 - -2.2 5,512,533 + +0.1 5,512,533 + -0.3 5,512,534 - -1.3 5,512,534 - +0.2 5,512,534 - -1.1 5,512,534 - +4.9 5,512,689 + -0.3
Or see this region's nucleotide sequence