Experiment: KB with Curcumin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4331 and Psyr_4332 are separated by 274 nucleotides Psyr_4332 and Psyr_4333 are separated by 25 nucleotides Psyr_4333 and Psyr_4334 are separated by 6 nucleotides
Psyr_4331: Psyr_4331 - galactose 1-dehydrogenase, at 5,182,992 to 5,183,918
_4331
Psyr_4332: Psyr_4332 - conserved hypothetical protein, at 5,184,193 to 5,184,612
_4332
Psyr_4333: Psyr_4333 - Cation efflux protein, at 5,184,638 to 5,185,531
_4333
Psyr_4334: Psyr_4334 - conserved hypothetical protein, at 5,185,538 to 5,186,704
_4334
Position (kb) 5184
5185
5186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5183.720 kb on + strand, within Psyr_4331 at 5183.721 kb on - strand, within Psyr_4331 at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.918 kb on + strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.919 kb on - strand at 5183.939 kb on + strand at 5183.940 kb on - strand at 5183.944 kb on - strand at 5183.958 kb on + strand at 5183.970 kb on + strand at 5184.133 kb on + strand at 5184.133 kb on + strand at 5184.133 kb on + strand at 5184.134 kb on - strand at 5184.134 kb on - strand at 5184.140 kb on - strand at 5184.140 kb on - strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.161 kb on + strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.162 kb on - strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.163 kb on + strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.164 kb on - strand at 5184.267 kb on + strand, within Psyr_4332 at 5184.267 kb on + strand, within Psyr_4332 at 5184.267 kb on + strand, within Psyr_4332 at 5184.268 kb on - strand, within Psyr_4332 at 5184.268 kb on - strand, within Psyr_4332 at 5184.274 kb on + strand, within Psyr_4332 at 5184.274 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.352 kb on + strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.353 kb on - strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.406 kb on + strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.407 kb on - strand, within Psyr_4332 at 5184.562 kb on - strand, within Psyr_4332 at 5184.827 kb on + strand, within Psyr_4333 at 5184.827 kb on + strand, within Psyr_4333 at 5184.828 kb on - strand, within Psyr_4333 at 5184.828 kb on - strand, within Psyr_4333 at 5184.828 kb on - strand, within Psyr_4333 at 5185.104 kb on - strand, within Psyr_4333 at 5185.157 kb on + strand, within Psyr_4333 at 5185.157 kb on + strand, within Psyr_4333 at 5185.158 kb on - strand, within Psyr_4333 at 5185.184 kb on + strand, within Psyr_4333 at 5185.184 kb on + strand, within Psyr_4333 at 5185.185 kb on - strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.208 kb on + strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.209 kb on - strand, within Psyr_4333 at 5185.210 kb on + strand, within Psyr_4333 at 5185.210 kb on + strand, within Psyr_4333 at 5185.211 kb on - strand, within Psyr_4333 at 5185.211 kb on - strand, within Psyr_4333 at 5185.211 kb on - strand, within Psyr_4333 at 5185.489 kb on - strand at 5185.489 kb on - strand at 5185.551 kb on + strand at 5185.552 kb on - strand at 5185.677 kb on + strand, within Psyr_4334 at 5185.677 kb on + strand, within Psyr_4334 at 5185.678 kb on - strand, within Psyr_4334 at 5185.678 kb on - strand, within Psyr_4334 at 5185.678 kb on - strand, within Psyr_4334 at 5185.682 kb on - strand, within Psyr_4334 at 5185.682 kb on - strand, within Psyr_4334 at 5185.773 kb on + strand, within Psyr_4334 at 5185.773 kb on + strand, within Psyr_4334 at 5185.774 kb on - strand, within Psyr_4334 at 5185.809 kb on + strand, within Psyr_4334 at 5185.809 kb on + strand, within Psyr_4334 at 5185.810 kb on - strand, within Psyr_4334 at 5185.810 kb on - strand, within Psyr_4334 at 5185.810 kb on - strand, within Psyr_4334 at 5185.836 kb on + strand, within Psyr_4334 at 5185.837 kb on - strand, within Psyr_4334 at 5185.839 kb on + strand, within Psyr_4334 at 5185.839 kb on + strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.840 kb on - strand, within Psyr_4334 at 5185.880 kb on + strand, within Psyr_4334 at 5185.880 kb on + strand, within Psyr_4334 at 5185.880 kb on + strand, within Psyr_4334 at 5185.880 kb on + strand, within Psyr_4334 at 5185.881 kb on - strand, within Psyr_4334 at 5185.881 kb on - strand, within Psyr_4334 at 5185.881 kb on - strand, within Psyr_4334 at 5185.881 kb on - strand, within Psyr_4334 at 5185.944 kb on + strand, within Psyr_4334 at 5185.945 kb on - strand, within Psyr_4334 at 5185.945 kb on - strand, within Psyr_4334 at 5185.983 kb on + strand, within Psyr_4334 at 5185.983 kb on + strand, within Psyr_4334 at 5185.984 kb on - strand, within Psyr_4334 at 5185.986 kb on + strand, within Psyr_4334 at 5185.986 kb on + strand, within Psyr_4334 at 5185.986 kb on + strand, within Psyr_4334 at 5185.986 kb on + strand, within Psyr_4334 at 5185.986 kb on + strand, within Psyr_4334 at 5185.986 kb on + strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.987 kb on - strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.989 kb on + strand, within Psyr_4334 at 5185.990 kb on - strand, within Psyr_4334 at 5185.990 kb on - strand, within Psyr_4334 at 5186.039 kb on + strand, within Psyr_4334 at 5186.040 kb on - strand, within Psyr_4334 at 5186.040 kb on - strand, within Psyr_4334 at 5186.040 kb on - strand, within Psyr_4334 at 5186.040 kb on - strand, within Psyr_4334 at 5186.046 kb on + strand, within Psyr_4334 at 5186.175 kb on + strand, within Psyr_4334 at 5186.175 kb on + strand, within Psyr_4334 at 5186.178 kb on + strand, within Psyr_4334 at 5186.179 kb on - strand, within Psyr_4334
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Curcumin 10 mM remove 5,183,720 + Psyr_4331 0.79 +0.6 5,183,721 - Psyr_4331 0.79 +0.7 5,183,918 + -0.3 5,183,918 + +0.6 5,183,918 + -0.6 5,183,918 + -0.4 5,183,918 + -0.4 5,183,918 + +1.0 5,183,918 + +0.1 5,183,918 + -1.0 5,183,918 + -0.5 5,183,918 + -0.6 5,183,918 + -0.7 5,183,918 + -2.4 5,183,919 - +3.5 5,183,919 - -1.7 5,183,919 - -0.5 5,183,919 - -1.4 5,183,919 - -0.6 5,183,919 - +0.1 5,183,919 - -0.3 5,183,919 - -0.0 5,183,919 - +0.2 5,183,919 - +0.7 5,183,919 - +0.2 5,183,919 - +0.6 5,183,919 - -1.9 5,183,919 - +0.0 5,183,919 - +1.2 5,183,919 - -0.5 5,183,919 - +0.2 5,183,939 + -0.6 5,183,940 - -0.4 5,183,944 - +0.9 5,183,958 + -0.1 5,183,970 + +0.1 5,184,133 + -1.2 5,184,133 + -0.3 5,184,133 + +0.9 5,184,134 - +0.7 5,184,134 - -1.1 5,184,140 - +0.1 5,184,140 - +1.6 5,184,161 + -1.1 5,184,161 + -1.7 5,184,161 + -1.1 5,184,161 + +0.4 5,184,161 + +0.8 5,184,161 + +0.9 5,184,161 + +0.6 5,184,161 + +0.5 5,184,161 + -1.8 5,184,161 + -1.6 5,184,161 + -0.9 5,184,162 - -1.2 5,184,162 - -1.2 5,184,162 - -2.0 5,184,162 - +1.5 5,184,162 - +2.2 5,184,162 - +1.1 5,184,162 - -0.7 5,184,162 - +1.2 5,184,162 - -0.1 5,184,162 - -1.1 5,184,162 - +1.3 5,184,162 - -0.5 5,184,162 - +1.8 5,184,163 + +1.6 5,184,163 + +0.1 5,184,163 + -0.2 5,184,163 + -0.5 5,184,163 + -0.6 5,184,163 + -0.4 5,184,163 + +0.8 5,184,163 + -0.0 5,184,163 + +0.2 5,184,164 - -2.9 5,184,164 - -1.2 5,184,164 - +0.9 5,184,164 - -0.3 5,184,267 + Psyr_4332 0.18 +1.0 5,184,267 + Psyr_4332 0.18 +0.9 5,184,267 + Psyr_4332 0.18 +0.4 5,184,268 - Psyr_4332 0.18 -0.9 5,184,268 - Psyr_4332 0.18 +0.9 5,184,274 + Psyr_4332 0.19 +0.3 5,184,274 + Psyr_4332 0.19 +0.0 5,184,352 + Psyr_4332 0.38 +1.2 5,184,352 + Psyr_4332 0.38 +0.7 5,184,352 + Psyr_4332 0.38 -1.1 5,184,352 + Psyr_4332 0.38 -1.6 5,184,352 + Psyr_4332 0.38 +0.2 5,184,352 + Psyr_4332 0.38 +2.8 5,184,352 + Psyr_4332 0.38 -1.4 5,184,352 + Psyr_4332 0.38 -1.6 5,184,352 + Psyr_4332 0.38 -0.5 5,184,352 + Psyr_4332 0.38 -1.8 5,184,352 + Psyr_4332 0.38 +1.2 5,184,352 + Psyr_4332 0.38 -0.4 5,184,352 + Psyr_4332 0.38 -0.1 5,184,353 - Psyr_4332 0.38 -0.4 5,184,353 - Psyr_4332 0.38 -0.6 5,184,353 - Psyr_4332 0.38 +0.9 5,184,353 - Psyr_4332 0.38 +0.9 5,184,353 - Psyr_4332 0.38 -0.4 5,184,353 - Psyr_4332 0.38 -1.0 5,184,353 - Psyr_4332 0.38 +1.5 5,184,353 - Psyr_4332 0.38 +0.0 5,184,406 + Psyr_4332 0.51 -1.1 5,184,406 + Psyr_4332 0.51 -0.4 5,184,407 - Psyr_4332 0.51 -0.5 5,184,407 - Psyr_4332 0.51 -0.2 5,184,407 - Psyr_4332 0.51 -0.8 5,184,407 - Psyr_4332 0.51 -0.2 5,184,562 - Psyr_4332 0.88 +0.3 5,184,827 + Psyr_4333 0.21 -0.9 5,184,827 + Psyr_4333 0.21 +1.5 5,184,828 - Psyr_4333 0.21 +0.3 5,184,828 - Psyr_4333 0.21 -0.8 5,184,828 - Psyr_4333 0.21 +0.1 5,185,104 - Psyr_4333 0.52 -0.5 5,185,157 + Psyr_4333 0.58 +1.8 5,185,157 + Psyr_4333 0.58 +1.6 5,185,158 - Psyr_4333 0.58 +0.7 5,185,184 + Psyr_4333 0.61 +2.2 5,185,184 + Psyr_4333 0.61 +1.7 5,185,185 - Psyr_4333 0.61 -0.2 5,185,208 + Psyr_4333 0.64 +0.0 5,185,208 + Psyr_4333 0.64 -0.5 5,185,208 + Psyr_4333 0.64 +0.2 5,185,208 + Psyr_4333 0.64 -0.4 5,185,209 - Psyr_4333 0.64 +0.8 5,185,209 - Psyr_4333 0.64 -1.1 5,185,209 - Psyr_4333 0.64 +2.8 5,185,209 - Psyr_4333 0.64 -0.5 5,185,209 - Psyr_4333 0.64 +0.2 5,185,209 - Psyr_4333 0.64 +0.7 5,185,210 + Psyr_4333 0.64 +1.4 5,185,210 + Psyr_4333 0.64 +1.8 5,185,211 - Psyr_4333 0.64 +0.9 5,185,211 - Psyr_4333 0.64 -1.4 5,185,211 - Psyr_4333 0.64 -2.6 5,185,489 - +1.9 5,185,489 - -0.2 5,185,551 + +1.2 5,185,552 - +2.2 5,185,677 + Psyr_4334 0.12 +3.2 5,185,677 + Psyr_4334 0.12 -0.3 5,185,678 - Psyr_4334 0.12 +2.2 5,185,678 - Psyr_4334 0.12 +0.6 5,185,678 - Psyr_4334 0.12 +0.4 5,185,682 - Psyr_4334 0.12 +0.1 5,185,682 - Psyr_4334 0.12 -1.1 5,185,773 + Psyr_4334 0.20 -0.6 5,185,773 + Psyr_4334 0.20 -0.5 5,185,774 - Psyr_4334 0.20 +0.9 5,185,809 + Psyr_4334 0.23 +2.2 5,185,809 + Psyr_4334 0.23 -0.1 5,185,810 - Psyr_4334 0.23 +0.6 5,185,810 - Psyr_4334 0.23 +0.6 5,185,810 - Psyr_4334 0.23 -0.2 5,185,836 + Psyr_4334 0.26 -0.3 5,185,837 - Psyr_4334 0.26 -1.7 5,185,839 + Psyr_4334 0.26 -0.1 5,185,839 + Psyr_4334 0.26 -0.3 5,185,840 - Psyr_4334 0.26 -1.5 5,185,840 - Psyr_4334 0.26 +0.8 5,185,840 - Psyr_4334 0.26 +1.2 5,185,840 - Psyr_4334 0.26 +0.7 5,185,840 - Psyr_4334 0.26 +0.9 5,185,840 - Psyr_4334 0.26 -0.0 5,185,840 - Psyr_4334 0.26 +0.3 5,185,880 + Psyr_4334 0.29 +2.8 5,185,880 + Psyr_4334 0.29 -0.4 5,185,880 + Psyr_4334 0.29 +0.3 5,185,880 + Psyr_4334 0.29 +0.4 5,185,881 - Psyr_4334 0.29 -0.7 5,185,881 - Psyr_4334 0.29 +0.4 5,185,881 - Psyr_4334 0.29 -0.2 5,185,881 - Psyr_4334 0.29 -2.0 5,185,944 + Psyr_4334 0.35 +0.6 5,185,945 - Psyr_4334 0.35 +0.6 5,185,945 - Psyr_4334 0.35 +0.4 5,185,983 + Psyr_4334 0.38 +0.0 5,185,983 + Psyr_4334 0.38 -0.1 5,185,984 - Psyr_4334 0.38 -1.5 5,185,986 + Psyr_4334 0.38 -0.1 5,185,986 + Psyr_4334 0.38 -0.7 5,185,986 + Psyr_4334 0.38 +0.7 5,185,986 + Psyr_4334 0.38 +1.2 5,185,986 + Psyr_4334 0.38 +1.9 5,185,986 + Psyr_4334 0.38 +0.5 5,185,987 - Psyr_4334 0.38 +1.9 5,185,987 - Psyr_4334 0.38 +2.1 5,185,987 - Psyr_4334 0.38 -2.1 5,185,987 - Psyr_4334 0.38 -0.8 5,185,987 - Psyr_4334 0.38 +0.5 5,185,987 - Psyr_4334 0.38 -0.6 5,185,987 - Psyr_4334 0.38 -0.3 5,185,987 - Psyr_4334 0.38 -1.4 5,185,987 - Psyr_4334 0.38 +0.3 5,185,987 - Psyr_4334 0.38 -0.6 5,185,989 + Psyr_4334 0.39 -1.6 5,185,989 + Psyr_4334 0.39 +1.2 5,185,989 + Psyr_4334 0.39 -1.3 5,185,989 + Psyr_4334 0.39 +1.4 5,185,989 + Psyr_4334 0.39 +0.5 5,185,989 + Psyr_4334 0.39 +2.2 5,185,989 + Psyr_4334 0.39 +1.1 5,185,990 - Psyr_4334 0.39 +0.2 5,185,990 - Psyr_4334 0.39 +0.7 5,186,039 + Psyr_4334 0.43 +0.2 5,186,040 - Psyr_4334 0.43 -0.1 5,186,040 - Psyr_4334 0.43 +0.9 5,186,040 - Psyr_4334 0.43 -0.6 5,186,040 - Psyr_4334 0.43 +1.7 5,186,046 + Psyr_4334 0.44 -0.0 5,186,175 + Psyr_4334 0.55 -0.3 5,186,175 + Psyr_4334 0.55 -1.6 5,186,178 + Psyr_4334 0.55 -0.5 5,186,179 - Psyr_4334 0.55 +0.4
Or see this region's nucleotide sequence